C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L27a
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000531978 RPL27A-004 ENSG00000166441 9606 + 11:8682788-8685415 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008Q2 CIL_0008Q2_0001 VISTA 11:8432154-9033661
CIL_00049H CIL_00049H_0001 CGP 11:8612037-8714759
CIL_00049E CIL_00049E_0001 CGP 11:8682411-8910951

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005840 IEA ribosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000143107 Rpl27a-001 protein_coding Mus_musculus 0 411
ENSMUST00000077389 Gm7536-201 protein_coding Mus_musculus 0 409
ENSMUST00000084017 Gm5908-201 processed_pseudogene Mus_musculus 0 403
ENSMUST00000117531 Gm14044-001 processed_pseudogene Mus_musculus 0 392
ENSMUST00000080866 Gm5453-201 processed_pseudogene Mus_musculus 0 392
ENSMUST00000170338 RP23-323H18.3-001 processed_pseudogene Mus_musculus 0 387
ENSMUST00000075382 Rpl27a-ps1-201 processed_pseudogene Mus_musculus 0 381
ENSMUST00000122360 Gm13981-001 processed_pseudogene Mus_musculus 0 370
ENSMUST00000184561 Gm19353-001 processed_pseudogene Mus_musculus 0 370
ENSMUST00000084199 Gm6378-201 processed_pseudogene Mus_musculus 0 355
ENSMUST00000156921 Rpl27a-003 nonsense_mediated_decay Mus_musculus 0 350
ENSMUST00000121260 Gm14407-001 processed_pseudogene Mus_musculus 0 337
ENSMUST00000122320 Gm14439-001 processed_pseudogene Mus_musculus 0 320
ENSMUST00000117666 Gm12218-001 processed_pseudogene Mus_musculus 0 285
ENSMUST00000119886 Gm13038-001 processed_pseudogene Mus_musculus 0 272
ENSMUST00000119351 Gm5054-001 processed_pseudogene Mus_musculus 0 259
ENSMUST00000189120 RP24-158I9.1-001 processed_pseudogene Mus_musculus 0 244
ENSMUST00000122335 Gm11243-001 processed_pseudogene Mus_musculus 0 233
ENSMUST00000120082 Gm15798-001 processed_pseudogene Mus_musculus 0 226
ENSMUST00000120046 Gm5942-001 processed_pseudogene Mus_musculus 0 213
ENSMUST00000149143 Rpl27a-004 retained_intron Mus_musculus 0 195
ENSMUST00000119552 Gm13804-001 processed_pseudogene Mus_musculus 5.60519e-45 185
ENSMUST00000185704 RP23-122B3.2-001 processed_pseudogene Mus_musculus 7e-34 148
ENSMUST00000174303 Rpl27a-006 retained_intron Mus_musculus 9e-28 128
ENSMUST00000053298 Rpl27a-005 retained_intron Mus_musculus 3e-23 113
ENSMUST00000132877 Rpl27a-002 retained_intron Mus_musculus 3e-23 113

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