C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L27a
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000524496 RPL27A-007 ENSG00000166441 9606 + 11:8682789-8685847 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000524496
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000524496 124.879±0.00 215.379±0.00 46.436±0.00 120.893±0.00 249.366±0.00 126.588±0.00 123.874±0.00 116.507±0.00 417.619±0.00 161.128±0.00 400.601±0.00 237.251±115.06 134.311±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008Q2 CIL_0008Q2_0001 VISTA 11:8432154-9033661
CIL_00049H CIL_00049H_0001 CGP 11:8612037-8714759
CIL_00049E CIL_00049E_0001 CGP 11:8682411-8910951

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003735 IEA structural constituent of ribosome
GO:0005840 IEA ribosome
GO:0006412 IEA translation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000053298 Rpl27a-005 retained_intron Mus_musculus 0 516
ENSMUST00000143107 Rpl27a-001 protein_coding Mus_musculus 0 508
ENSMUST00000077389 Gm7536-201 protein_coding Mus_musculus 0 494
ENSMUST00000084017 Gm5908-201 processed_pseudogene Mus_musculus 0 490
ENSMUST00000117531 Gm14044-001 processed_pseudogene Mus_musculus 0 473
ENSMUST00000170338 RP23-323H18.3-001 processed_pseudogene Mus_musculus 0 473
ENSMUST00000118191 Gm8213-001 processed_pseudogene Mus_musculus 0 468
ENSMUST00000122360 Gm13981-001 processed_pseudogene Mus_musculus 0 462
ENSMUST00000084199 Gm6378-201 processed_pseudogene Mus_musculus 0 448
ENSMUST00000122416 Gm15727-001 processed_pseudogene Mus_musculus 0 429
ENSMUST00000121260 Gm14407-001 processed_pseudogene Mus_musculus 0 412
ENSMUST00000122320 Gm14439-001 processed_pseudogene Mus_musculus 0 405
ENSMUST00000120082 Gm15798-001 processed_pseudogene Mus_musculus 0 390
ENSMUST00000189120 RP24-158I9.1-001 processed_pseudogene Mus_musculus 0 387
ENSMUST00000119351 Gm5054-001 processed_pseudogene Mus_musculus 0 385
ENSMUST00000119886 Gm13038-001 processed_pseudogene Mus_musculus 0 361
ENSMUST00000117666 Gm12218-001 processed_pseudogene Mus_musculus 0 329
ENSMUST00000120046 Gm5942-001 processed_pseudogene Mus_musculus 0 320
ENSMUST00000122335 Gm11243-001 processed_pseudogene Mus_musculus 0 272
ENSMUST00000185704 RP23-122B3.2-001 processed_pseudogene Mus_musculus 0 230
ENSMUST00000119552 Gm13804-001 processed_pseudogene Mus_musculus 2.8026e-45 185
ENSMUST00000149143 Rpl27a-004 retained_intron Mus_musculus 6e-23 111
ENSMUST00000132877 Rpl27a-002 retained_intron Mus_musculus 6e-23 111
ENSMUST00000080866 Gm5453-201 processed_pseudogene Mus_musculus 2e-22 110
ENSMUST00000174303 Rpl27a-006 retained_intron Mus_musculus 3e-21 106
ENSMUST00000156921 Rpl27a-003 nonsense_mediated_decay Mus_musculus 3e-21 106
ENSMUST00000075382 Rpl27a-ps1-201 processed_pseudogene Mus_musculus 4e-19 99
ENSMUST00000184561 Gm19353-001 processed_pseudogene Mus_musculus 2e-17 94

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