C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L27a
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000530022 RPL27A-008 ENSG00000166441 9606 + 11:8682810-8685848 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000530022
Transcript ID Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000530022 14.745±0.00 25.097±0.00 55.845±0.00 38.711±0.00 20.867±0.00 51.274±0.00 77.875±0.00 56.831±0.00 21.524±0.00 322.116±216.61 255.746±143.04 39.507±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008Q2 CIL_0008Q2_0001 VISTA 11:8432154-9033661
CIL_00049H CIL_00049H_0001 CGP 11:8612037-8714759
CIL_00049E CIL_00049E_0001 CGP 11:8682411-8910951

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003735 IEA structural constituent of ribosome
GO:0005840 IEA ribosome
GO:0006412 IEA translation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000143107 Rpl27a-001 protein_coding Mus_musculus 0 610
ENSMUST00000077389 Gm7536-201 protein_coding Mus_musculus 0 595
ENSMUST00000084017 Gm5908-201 processed_pseudogene Mus_musculus 0 586
ENSMUST00000117531 Gm14044-001 processed_pseudogene Mus_musculus 0 575
ENSMUST00000170338 RP23-323H18.3-001 processed_pseudogene Mus_musculus 0 575
ENSMUST00000080866 Gm5453-201 processed_pseudogene Mus_musculus 0 564
ENSMUST00000075382 Rpl27a-ps1-201 processed_pseudogene Mus_musculus 0 553
ENSMUST00000122360 Gm13981-001 processed_pseudogene Mus_musculus 0 542
ENSMUST00000184561 Gm19353-001 processed_pseudogene Mus_musculus 0 531
ENSMUST00000084199 Gm6378-201 processed_pseudogene Mus_musculus 0 521
ENSMUST00000118191 Gm8213-001 processed_pseudogene Mus_musculus 0 514
ENSMUST00000053298 Rpl27a-005 retained_intron Mus_musculus 0 510
ENSMUST00000121260 Gm14407-001 processed_pseudogene Mus_musculus 0 508
ENSMUST00000122320 Gm14439-001 processed_pseudogene Mus_musculus 0 494
ENSMUST00000122416 Gm15727-001 processed_pseudogene Mus_musculus 0 483
ENSMUST00000119351 Gm5054-001 processed_pseudogene Mus_musculus 0 431
ENSMUST00000117666 Gm12218-001 processed_pseudogene Mus_musculus 0 409
ENSMUST00000119886 Gm13038-001 processed_pseudogene Mus_musculus 0 401
ENSMUST00000189120 RP24-158I9.1-001 processed_pseudogene Mus_musculus 0 398
ENSMUST00000120082 Gm15798-001 processed_pseudogene Mus_musculus 0 390
ENSMUST00000156921 Rpl27a-003 nonsense_mediated_decay Mus_musculus 0 351
ENSMUST00000120046 Gm5942-001 processed_pseudogene Mus_musculus 0 339
ENSMUST00000122335 Gm11243-001 processed_pseudogene Mus_musculus 0 309
ENSMUST00000185704 RP23-122B3.2-001 processed_pseudogene Mus_musculus 0 230
ENSMUST00000149143 Rpl27a-004 retained_intron Mus_musculus 0 189
ENSMUST00000119552 Gm13804-001 processed_pseudogene Mus_musculus 5.60519e-45 185
ENSMUST00000174303 Rpl27a-006 retained_intron Mus_musculus 4e-31 139
ENSMUST00000132877 Rpl27a-002 retained_intron Mus_musculus 1e-21 108

Loading