C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L27a
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000314138 RPL27A-001 ENSG00000166441 9606 + 11:8682411-8689872 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainENST00000314138
Transcript ID Brain
ENST00000314138 3.600±0.77

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008Q2 CIL_0008Q2_0001 VISTA 11:8432154-9033661
CIL_00049H CIL_00049H_0001 CGP 11:8612037-8714759
CIL_00049E CIL_00049E_0001 CGP 11:8682411-8910951

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003723 TAS RNA binding
GO:0003735 IEA:NAS structural constituent of ribosome
GO:0005515 IPI protein binding
GO:0005829 TAS cytosol
GO:0005840 IEA ribosome
GO:0006412 IEA:NAS translation
GO:0006413 TAS translational initiation
GO:0006414 TAS translational elongation
GO:0006415 TAS translational termination
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0019058 TAS viral life cycle
GO:0019083 TAS viral transcription
GO:0022625 IDA cytosolic large ribosomal subunit
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000143107 Rpl27a-001 protein_coding Mus_musculus 0 638
ENSMUST00000077389 Gm7536-201 protein_coding Mus_musculus 0 599
ENSMUST00000084017 Gm5908-201 processed_pseudogene Mus_musculus 0 590
ENSMUST00000117531 Gm14044-001 processed_pseudogene Mus_musculus 0 579
ENSMUST00000170338 RP23-323H18.3-001 processed_pseudogene Mus_musculus 0 579
ENSMUST00000080866 Gm5453-201 processed_pseudogene Mus_musculus 0 568
ENSMUST00000075382 Rpl27a-ps1-201 processed_pseudogene Mus_musculus 0 556
ENSMUST00000122360 Gm13981-001 processed_pseudogene Mus_musculus 0 545
ENSMUST00000184561 Gm19353-001 processed_pseudogene Mus_musculus 0 534
ENSMUST00000084199 Gm6378-201 processed_pseudogene Mus_musculus 0 525
ENSMUST00000118191 Gm8213-001 processed_pseudogene Mus_musculus 0 518
ENSMUST00000121260 Gm14407-001 processed_pseudogene Mus_musculus 0 512
ENSMUST00000053298 Rpl27a-005 retained_intron Mus_musculus 0 510
ENSMUST00000122320 Gm14439-001 processed_pseudogene Mus_musculus 0 494
ENSMUST00000122416 Gm15727-001 processed_pseudogene Mus_musculus 0 486
ENSMUST00000119351 Gm5054-001 processed_pseudogene Mus_musculus 0 435
ENSMUST00000117666 Gm12218-001 processed_pseudogene Mus_musculus 0 412
ENSMUST00000119886 Gm13038-001 processed_pseudogene Mus_musculus 0 407
ENSMUST00000189120 RP24-158I9.1-001 processed_pseudogene Mus_musculus 0 401
ENSMUST00000120082 Gm15798-001 processed_pseudogene Mus_musculus 0 390
ENSMUST00000156921 Rpl27a-003 nonsense_mediated_decay Mus_musculus 0 350
ENSMUST00000120046 Gm5942-001 processed_pseudogene Mus_musculus 0 339
ENSMUST00000122335 Gm11243-001 processed_pseudogene Mus_musculus 0 309
ENSMUST00000185704 RP23-122B3.2-001 processed_pseudogene Mus_musculus 0 230
ENSMUST00000149143 Rpl27a-004 retained_intron Mus_musculus 0 195
ENSMUST00000119552 Gm13804-001 processed_pseudogene Mus_musculus 2.94273e-44 185
ENSMUST00000174303 Rpl27a-006 retained_intron Mus_musculus 5e-27 128
ENSMUST00000132877 Rpl27a-002 retained_intron Mus_musculus 1e-22 113
ENSMUST00000162168 Zkscan5-004 nonsense_mediated_decay Mus_musculus 0.0003 53

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