C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000492974 RP11-475C16.1-001 ENSG00000218426 9606 - 6:153282287-153282733 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000492974
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000492974 0.258±0.00 0.413±0.00 0.198±0.00 0.144±0.00 0.662±0.00 0.211±0.00 0.235±0.00 0.090±0.05 0.317±0.00 0.600±0.00 1.865±2.08 1.681±1.21 0.194±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002QK CIL_0002QK_0002 CGP 6:153004459-154246867

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000143107 Rpl27a-001 protein_coding Mus_musculus 0 579
ENSMUST00000077389 Gm7536-201 protein_coding Mus_musculus 0 577
ENSMUST00000084017 Gm5908-201 processed_pseudogene Mus_musculus 0 568
ENSMUST00000117531 Gm14044-001 processed_pseudogene Mus_musculus 0 556
ENSMUST00000170338 RP23-323H18.3-001 processed_pseudogene Mus_musculus 0 556
ENSMUST00000080866 Gm5453-201 processed_pseudogene Mus_musculus 0 545
ENSMUST00000075382 Rpl27a-ps1-201 processed_pseudogene Mus_musculus 0 540
ENSMUST00000122360 Gm13981-001 processed_pseudogene Mus_musculus 0 523
ENSMUST00000184561 Gm19353-001 processed_pseudogene Mus_musculus 0 512
ENSMUST00000084199 Gm6378-201 processed_pseudogene Mus_musculus 0 503
ENSMUST00000118191 Gm8213-001 processed_pseudogene Mus_musculus 0 501
ENSMUST00000121260 Gm14407-001 processed_pseudogene Mus_musculus 0 496
ENSMUST00000053298 Rpl27a-005 retained_intron Mus_musculus 0 481
ENSMUST00000122320 Gm14439-001 processed_pseudogene Mus_musculus 0 477
ENSMUST00000122416 Gm15727-001 processed_pseudogene Mus_musculus 0 464
ENSMUST00000119351 Gm5054-001 processed_pseudogene Mus_musculus 0 418
ENSMUST00000117666 Gm12218-001 processed_pseudogene Mus_musculus 0 390
ENSMUST00000189120 RP24-158I9.1-001 processed_pseudogene Mus_musculus 0 385
ENSMUST00000119886 Gm13038-001 processed_pseudogene Mus_musculus 0 383
ENSMUST00000120082 Gm15798-001 processed_pseudogene Mus_musculus 0 374
ENSMUST00000156921 Rpl27a-003 nonsense_mediated_decay Mus_musculus 0 344
ENSMUST00000120046 Gm5942-001 processed_pseudogene Mus_musculus 0 316
ENSMUST00000122335 Gm11243-001 processed_pseudogene Mus_musculus 0 281
ENSMUST00000185704 RP23-122B3.2-001 processed_pseudogene Mus_musculus 0 207
ENSMUST00000149143 Rpl27a-004 retained_intron Mus_musculus 0 187
ENSMUST00000119552 Gm13804-001 processed_pseudogene Mus_musculus 2.8026e-45 185
ENSMUST00000174303 Rpl27a-006 retained_intron Mus_musculus 2e-26 122
ENSMUST00000132877 Rpl27a-002 retained_intron Mus_musculus 2e-21 106

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