C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L27a pseudogene 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000469428 RPL27AP5-001 ENSG00000182383 9606 - 5:74990189-74990637 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyLiverLungMuscleTestisENST00000469428
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Liver Lung Muscle Testis
ENST00000469428 0.116±0.00 0.167±0.00 0.226±0.00 0.175±0.00 0.282±0.00 0.043±0.00 0.074±0.00 0.124±0.00 0.109±0.00 0.187±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000143107 Rpl27a-001 protein_coding Mus_musculus 0 484
ENSMUST00000077389 Gm7536-201 protein_coding Mus_musculus 0 483
ENSMUST00000084017 Gm5908-201 processed_pseudogene Mus_musculus 0 473
ENSMUST00000117531 Gm14044-001 processed_pseudogene Mus_musculus 0 468
ENSMUST00000170338 RP23-323H18.3-001 processed_pseudogene Mus_musculus 0 462
ENSMUST00000075382 Rpl27a-ps1-201 processed_pseudogene Mus_musculus 0 457
ENSMUST00000080866 Gm5453-201 processed_pseudogene Mus_musculus 0 451
ENSMUST00000122360 Gm13981-001 processed_pseudogene Mus_musculus 0 440
ENSMUST00000084199 Gm6378-201 processed_pseudogene Mus_musculus 0 436
ENSMUST00000118191 Gm8213-001 processed_pseudogene Mus_musculus 0 429
ENSMUST00000053298 Rpl27a-005 retained_intron Mus_musculus 0 420
ENSMUST00000184561 Gm19353-001 processed_pseudogene Mus_musculus 0 412
ENSMUST00000121260 Gm14407-001 processed_pseudogene Mus_musculus 0 412
ENSMUST00000122320 Gm14439-001 processed_pseudogene Mus_musculus 0 396
ENSMUST00000122416 Gm15727-001 processed_pseudogene Mus_musculus 0 387
ENSMUST00000117666 Gm12218-001 processed_pseudogene Mus_musculus 0 351
ENSMUST00000119351 Gm5054-001 processed_pseudogene Mus_musculus 0 351
ENSMUST00000119886 Gm13038-001 processed_pseudogene Mus_musculus 0 350
ENSMUST00000120082 Gm15798-001 processed_pseudogene Mus_musculus 0 335
ENSMUST00000189120 RP24-158I9.1-001 processed_pseudogene Mus_musculus 0 329
ENSMUST00000122335 Gm11243-001 processed_pseudogene Mus_musculus 0 315
ENSMUST00000156921 Rpl27a-003 nonsense_mediated_decay Mus_musculus 0 283
ENSMUST00000120046 Gm5942-001 processed_pseudogene Mus_musculus 0 250
ENSMUST00000185704 RP23-122B3.2-001 processed_pseudogene Mus_musculus 2.8026e-45 185
ENSMUST00000119552 Gm13804-001 processed_pseudogene Mus_musculus 1e-39 167
ENSMUST00000149143 Rpl27a-004 retained_intron Mus_musculus 6e-27 124
ENSMUST00000174303 Rpl27a-006 retained_intron Mus_musculus 0.00000000000001 84
ENSMUST00000132877 Rpl27a-002 retained_intron Mus_musculus 0.0000000000001 81

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