C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 12623
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000119849 Gm12623-001 ENSMUSG00000093924 10090 - 11:60573567-60575549 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastKidneyLiverOvaryPlacentaTestisENSMUST00000119849
Transcript ID Bladder Brain Breast Kidney Liver Ovary Placenta Testis
ENSMUST00000119849 0.005±0.00 0.003±0.00 0.017±0.00 0.047±0.02 0.012±0.01 0.072±0.01 0.003±0.00 0.033±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000E2 CIL_0000E2_0002 CGP 11:60536381-60714186

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000082327 pabpc4-001 protein_coding Danio_rerio 1e-39 169
ENST00000372856 PABPC4-004 protein_coding Homo_sapiens 0 1812
ENST00000372857 PABPC4-001 protein_coding Homo_sapiens 0 1744
ENST00000372858 PABPC4-002 protein_coding Homo_sapiens 0 2394
ENST00000372862 PABPC4-003 protein_coding Homo_sapiens 0 1744
ENST00000414338 RP11-393N21.1-001 processed_pseudogene Homo_sapiens 2e-31 139
ENST00000421687 PABPC4-017 protein_coding Homo_sapiens 0 1677
ENST00000437136 PABPC4-013 protein_coding Homo_sapiens 0 627
ENST00000461578 PABPC4-014 retained_intron Homo_sapiens 1e-35 152
ENST00000468476 PABPC4-006 retained_intron Homo_sapiens 2e-34 152
ENST00000470443 PABPC4-007 nonsense_mediated_decay Homo_sapiens 0 929
ENST00000474378 PABPC4-008 protein_coding Homo_sapiens 0 604
ENST00000477556 PABPC4-009 retained_intron Homo_sapiens 0 265
ENST00000482028 PABPC4-012 retained_intron Homo_sapiens 2e-27 126
ENST00000483770 PABPC4-016 retained_intron Homo_sapiens 0 355
ENST00000484555 PABPC4-015 retained_intron Homo_sapiens 0 250
ENST00000492468 PABPC4-005 retained_intron Homo_sapiens 0 366
ENST00000492519 PABPC4-010 retained_intron Homo_sapiens 0 326
ENST00000513632 PABPC4-020 retained_intron Homo_sapiens 0 231
ENST00000525045 PABPC4-023 retained_intron Homo_sapiens 0 331
ENST00000525669 PABPC4-022 retained_intron Homo_sapiens 0 505
ENST00000525751 PABPC4-019 retained_intron Homo_sapiens 0 468
ENST00000527718 PABPC4-021 protein_coding Homo_sapiens 0 667
ENST00000529216 PABPC4-025 processed_transcript Homo_sapiens 0 211
ENST00000530186 PABPC4-024 protein_coding Homo_sapiens 0 261
ENST00000549280 RP11-813P10.2-001 processed_pseudogene Homo_sapiens 0 370
ENST00000555663 CTD-2643K12.1-001 processed_pseudogene Homo_sapiens 0 396

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