C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein S25, pseudogene 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000119876 Rps25-ps1-001 ENSMUSG00000067344 10090 + 6:145266400-145266777 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000119876
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000119876 0.503±0.22 1.039±0.40 0.676±0.19 0.534±0.28 1.003±0.27 2.149±1.18 1.641±1.31 3.098±1.97 2.353±2.34 0.941±0.45 0.348±0.09 1.339±0.75 0.553±0.28 1.705±1.22

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004X7 CIL_0004X7_0002 CGP 6:145216699-145614319

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000404787 RP1-140K8.2-001 processed_pseudogene Homo_sapiens 0 403
ENST00000427600 RP11-543B16.1-001 processed_pseudogene Homo_sapiens 0 379
ENST00000469891 CTD-2287O16.1-001 processed_pseudogene Homo_sapiens 0 438
ENST00000476147 RP11-587D21.1-001 processed_pseudogene Homo_sapiens 0 435
ENST00000524864 RPS25-002 retained_intron Homo_sapiens 0 224
ENST00000527673 RPS25-001 protein_coding Homo_sapiens 0 466
ENST00000527791 RPS25-003 nonsense_mediated_decay Homo_sapiens 0 252
ENST00000527853 RPS25-008 retained_intron Homo_sapiens 0 359
ENST00000532567 RPS25-005 nonsense_mediated_decay Homo_sapiens 0 357

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