C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 13508
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000121639 Gm13508-001 ENSMUSG00000084177 10090 - 2:49327377-49328151 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainLiverOvaryTestisENSMUST00000121639
Transcript ID Adipose Brain Liver Ovary Testis
ENSMUST00000121639 0.094±0.03 0.056±0.02 0.105±0.00 0.034±0.00 0.074±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000210 CIL_000210_0002 CGP 2:48949510-49551948
CIL_0007N4 CIL_0007N4_0002 UCNEbase 2:49272783-49551184

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000274065 RPS3A-001 protein_coding Homo_sapiens 0 719
ENST00000389400 RPS3AP5-001 processed_pseudogene Homo_sapiens 0 344
ENST00000397972 RPS3AP33-001 processed_pseudogene Homo_sapiens 0 422
ENST00000398259 RPS3AP26-001 processed_pseudogene Homo_sapiens 0 688
ENST00000411660 RPS3AP25-001 processed_pseudogene Homo_sapiens 0 660
ENST00000418798 AC013429.5-001 processed_pseudogene Homo_sapiens 0 414
ENST00000419176 RP11-119F7.3-001 processed_pseudogene Homo_sapiens 0 460
ENST00000426436 RPS3AP39-001 processed_pseudogene Homo_sapiens 0 425
ENST00000426743 RP11-163G10.2-001 processed_pseudogene Homo_sapiens 0 375
ENST00000437728 RPS3AP29-001 processed_pseudogene Homo_sapiens 0 479
ENST00000438784 RPS3AP30-001 processed_pseudogene Homo_sapiens 0 449
ENST00000443616 RPS3AP12-001 processed_pseudogene Homo_sapiens 0 254
ENST00000450463 CTB-1048E9.7-001 processed_pseudogene Homo_sapiens 0 523
ENST00000451219 CTA-85E5.6-001 processed_pseudogene Homo_sapiens 0 508
ENST00000454716 RPS3AP53-001 processed_pseudogene Homo_sapiens 0 435
ENST00000454879 RP11-548N1.1-001 processed_pseudogene Homo_sapiens 0 200
ENST00000461022 AC010468.1-001 processed_pseudogene Homo_sapiens 0 584
ENST00000462701 RPS3AP41-001 processed_pseudogene Homo_sapiens 0 396
ENST00000468675 RP11-1396O13.2-001 processed_pseudogene Homo_sapiens 0 460
ENST00000470389 RP11-382N13.1-001 processed_pseudogene Homo_sapiens 0 424
ENST00000472161 RPS3AP49-001 processed_pseudogene Homo_sapiens 0 647
ENST00000474167 CTC-451P13.1-001 processed_pseudogene Homo_sapiens 0 628
ENST00000478386 RPS3AP35-001 processed_pseudogene Homo_sapiens 0 446
ENST00000479743 RPS3AP43-001 processed_pseudogene Homo_sapiens 0 479
ENST00000479876 RPS3AP32-001 processed_pseudogene Homo_sapiens 0 287
ENST00000480160 RPS3AP40-001 processed_pseudogene Homo_sapiens 0 451
ENST00000483613 RPS3AP34-001 processed_pseudogene Homo_sapiens 0 435
ENST00000483874 RPS3AP15-001 processed_pseudogene Homo_sapiens 0 490
ENST00000484430 RPS3AP6-001 processed_pseudogene Homo_sapiens 0 702
ENST00000485355 RP11-489M13.1-001 processed_pseudogene Homo_sapiens 0 451
ENST00000487064 RPS3AP50-001 processed_pseudogene Homo_sapiens 0 427
ENST00000487100 RPS3AP47-001 processed_pseudogene Homo_sapiens 0 649
ENST00000493479 RP11-555K12.1-001 processed_pseudogene Homo_sapiens 0 540
ENST00000498840 RP11-52B19.1-001 processed_pseudogene Homo_sapiens 0 429
ENST00000503002 RPS3A-008 protein_coding Homo_sapiens 0 235
ENST00000505243 RPS3A-005 protein_coding Homo_sapiens 0 327
ENST00000506126 RPS3A-007 protein_coding Homo_sapiens 0 706
ENST00000507327 RPS3A-011 protein_coding Homo_sapiens 0 632
ENST00000507485 RPS3A-002 retained_intron Homo_sapiens 6.00036e-42 176
ENST00000508783 RPS3A-009 protein_coding Homo_sapiens 0 359
ENST00000509736 RPS3A-006 protein_coding Homo_sapiens 0 418
ENST00000510993 RPS3A-010 protein_coding Homo_sapiens 0 651
ENST00000512690 RPS3A-015 protein_coding Homo_sapiens 0 673
ENST00000512797 RPS3A-014 protein_coding Homo_sapiens 0 435
ENST00000514682 RPS3A-004 protein_coding Homo_sapiens 0 706
ENST00000515792 RPS3A-012 protein_coding Homo_sapiens 0 418
ENST00000515818 RPS3A-013 nonsense_mediated_decay Homo_sapiens 0 257
ENST00000517591 AC008694.2-001 processed_pseudogene Homo_sapiens 5.60519e-45 183
ENST00000555161 RPS3AP4-001 processed_pseudogene Homo_sapiens 0 418
ENST00000604922 SH3D19-012 processed_transcript Homo_sapiens 4.06377e-44 182

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