C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000493479 RP11-555K12.1-001 ENSG00000243417 9606 - 4:152551277-152552364 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000493479
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000493479 0.014±0.00 0.184±0.00 0.081±0.00 0.370±0.00 0.152±0.13 0.025±0.00 0.055±0.00 0.025±0.00 0.127±0.00 0.049±0.00 0.033±0.01 0.096±0.04 0.062±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008CH CIL_0008CH_0001 VISTA 4:152066503-152669365

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000074680 Rps3a3-001 processed_pseudogene Mus_musculus 0 743
ENSMUST00000029722 Rps3a1-001 protein_coding Mus_musculus 0 737
ENSMUST00000074245 Rps3a2-001 processed_pseudogene Mus_musculus 0 721
ENSMUST00000119822 Gm13408-001 processed_pseudogene Mus_musculus 0 708
ENSMUST00000121639 Gm13508-001 processed_pseudogene Mus_musculus 0 540
ENSMUST00000186012 RP24-117M7.2-001 processed_pseudogene Mus_musculus 0 470

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