C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: serine/arginine-rich splicing factor 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000125814 Srsf5-006 ENSMUSG00000021134 10090 + 12:80945548-80948504 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000125814
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000125814 74.859±13.49 81.505±9.57 172.430±23.44 141.160±75.49 108.255±11.84 100.831±19.97 70.363±13.80 99.005±4.48 115.075±14.77 200.450±5.92 32.715±2.03 190.263±112.52 136.609±90.17 106.837±86.71

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002M1 CIL_0002M1_0002 CGP 12:80790532-80950507
CIL_0000U3 CIL_0000U3_0002 CGP 12:80945504-80968079

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000394366 SRSF5-005 protein_coding Homo_sapiens 0 538
ENST00000553369 SRSF5-018 protein_coding Homo_sapiens 0 769
ENST00000553521 SRSF5-003 protein_coding Homo_sapiens 0 619
ENST00000553548 SRSF5-016 protein_coding Homo_sapiens 0 496
ENST00000553635 SRSF5-004 protein_coding Homo_sapiens 0 542
ENST00000554021 SRSF5-010 protein_coding Homo_sapiens 0 780
ENST00000554465 SRSF5-001 retained_intron Homo_sapiens 0 612
ENST00000555349 SRSF5-011 protein_coding Homo_sapiens 0 538
ENST00000555547 SRSF5-007 nonsense_mediated_decay Homo_sapiens 0 1225
ENST00000556184 SRSF5-006 retained_intron Homo_sapiens 0 612
ENST00000556330 SRSF5-014 retained_intron Homo_sapiens 0 209
ENST00000556436 SRSF5-017 retained_intron Homo_sapiens 5e-34 148
ENST00000556587 SRSF5-019 processed_transcript Homo_sapiens 0 414
ENST00000557154 SRSF5-002 protein_coding Homo_sapiens 0 619
ENST00000557460 SRSF5-015 retained_intron Homo_sapiens 0 496

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