C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000U3_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000100650-ENSG00000100652 CGP 9606 14:69726900-69797289
GeneTranscriptPositionBiotype
ENSG00000100650 (SRSF5)
serine/arginine-rich splicing factor 5 		ENST00000394366 (SRSF5-005) 69767093-69771973 protein_coding
ENST00000553369 (SRSF5-018) 69767112-69769594 protein_coding
ENST00000553521 (SRSF5-003) 69726900-69772004 protein_coding
ENST00000553548 (SRSF5-016) 69767112-69769189 protein_coding
ENST00000553635 (SRSF5-004) 69767157-69771949 protein_coding
ENST00000554021 (SRSF5-010) 69767940-69769644 protein_coding
ENST00000554465 (SRSF5-001) 69767093-69772004 retained_intron
ENST00000554929 (SRSF5-008) 69770881-69771915 retained_intron
ENST00000555349 (SRSF5-011) 69767940-69769383 protein_coding
ENST00000555412 (SRSF5-009) 69767783-69768675 retained_intron
ENST00000555547 (SRSF5-007) 69767186-69771654 nonsense_mediated_decay
ENST00000556184 (SRSF5-006) 69767172-69771642 retained_intron
ENST00000556330 (SRSF5-014) 69769746-69771257 retained_intron
ENST00000556436 (SRSF5-017) 69767240-69768928 retained_intron
ENST00000556587 (SRSF5-019) 69767182-69772005 processed_transcript
ENST00000556647 (SRSF5-013) 69770448-69772005 processed_transcript
ENST00000557154 (SRSF5-002) 69767124-69771991 protein_coding
ENST00000557435 (SRSF5-012) 69767116-69768619 retained_intron
ENST00000557460 (SRSF5-015) 69767175-69771108 retained_intron
ENSG00000100652 (SLC10A1)
solute carrier family 10 (sodium/bile acid cotransporter), member 1 		ENST00000216540 (SLC10A1-001) 69775417-69797289 protein_coding

Homo sapiens Ensembl (GRCh38)

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CIL_0000U3_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000021134-ENSMUSG00000021135 CGP 10090 12:80945504-80968079
GeneTranscriptPositionBiotype
ENSMUSG00000021134 (Srsf5)
serine/arginine-rich splicing factor 5 		ENSMUST00000094693 (Srsf5-201) 80945504-80950507 protein_coding
ENSMUST00000110351 (Srsf5-003) 80945532-80950503 protein_coding
ENSMUST00000110352 (Srsf5-001) 80945532-80950503 protein_coding
ENSMUST00000110354 (Srsf5-009) 80945520-80950503 protein_coding
ENSMUST00000110356 (Srsf5-004) 80945585-80950503 protein_coding
ENSMUST00000125814 (Srsf5-006) 80945548-80948504 processed_transcript
ENSMUST00000133783 (Srsf5-012) 80945520-80950503 retained_intron
ENSMUST00000138434 (Srsf5-010) 80945570-80947528 nonsense_mediated_decay
ENSMUST00000151036 (Srsf5-007) 80946376-80950497 retained_intron
ENSMUST00000151968 (Srsf5-011) 80945579-80946970 processed_transcript
ENSMUST00000152662 (Srsf5-008) 80945534-80946848 processed_transcript
ENSMUST00000153056 (Srsf5-005) 80945532-80950503 retained_intron
ENSMUSG00000021135 (Slc10a1)
solute carrier family 10 (sodium/bile acid cotransporter family), member 1 		ENSMUST00000095572 (Slc10a1-201) 80953185-80968079 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000U3_0001ENSG00000100650ENST00000394366ENST00000553369ENST00000553521ENST00000553548ENST00000553635ENST00000554021ENST00000554465ENST00000554929ENST00000555349ENST00000555412ENST00000555547ENST00000556184ENST00000556330ENST00000556436ENST00000556587ENST00000556647ENST00000557154ENST00000557435ENST00000557460ENSG00000100652ENST00000216540CIL_0000U3_0002ENSMUSG00000021134ENSMUST00000094693ENSMUST00000110351ENSMUST00000110352ENSMUST00000110354ENSMUST00000110356ENSMUST00000125814ENSMUST00000133783ENSMUST00000138434ENSMUST00000151036ENSMUST00000151968ENSMUST00000152662ENSMUST00000153056ENSMUSG00000021135ENSMUST00000095572
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000U3_0001ENSG00000100650ENST00000394366ENST00000553369ENST00000553548ENST00000553635ENST00000554465ENST00000555547ENST00000556184ENST00000556330ENST00000556587ENST00000556647ENST00000557154ENSG00000100652ENST00000216540CIL_0000U3_0002ENSMUSG00000021134ENSMUST00000094693ENSMUST00000110351ENSMUST00000110352ENSMUST00000110356ENSMUST00000125814ENSMUST00000152662ENSMUST00000153056ENSMUSG00000021135ENSMUST00000095572
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000100650 ENST00000394366 N/A N/A N/A 45.639±0.00 N/A N/A N/A N/A N/A 16.103±0.00 3.322±0.00 32.970±0.00 N/A N/A
ENST00000553369 53.480±0.00 130.681±0.00 N/A 162.545±0.00 N/A 11.757±0.00 27.806±0.00 N/A N/A N/A N/A 32.776±0.00 49.647±0.00 32.042±0.00
ENST00000553521 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000553548 N/A N/A 33.574±0.00 24.285±0.00 N/A N/A 10.897±0.00 N/A 44.350±0.00 N/A N/A 46.304±19.72 92.236±0.00 174.729±0.00
ENST00000553635 N/A N/A N/A N/A N/A N/A 13.742±0.00 N/A 11.668±0.00 N/A N/A 29.772±0.00 10.278±2.98 N/A
ENST00000554021 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554465 N/A N/A N/A N/A N/A 6.373±0.00 N/A N/A N/A 10.217±0.00 N/A N/A N/A N/A
ENST00000554929 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555349 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555412 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555547 N/A N/A N/A N/A N/A 2.034±0.00 8.563±0.00 N/A 6.583±0.00 15.473±0.00 2.999±0.27 32.298±8.02 6.903±0.33 61.825±0.00
ENST00000556184 7.198±0.00 N/A 19.945±0.00 14.185±0.00 17.920±5.59 14.406±11.68 5.846±1.18 18.252±1.37 20.770±0.00 21.585±11.77 N/A 15.932±2.72 4.157±0.00 17.747±11.81
ENST00000556330 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 10.349±1.03 N/A N/A N/A
ENST00000556436 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556587 N/A N/A N/A N/A N/A 2.621±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556647 35.292±0.00 118.958±0.00 N/A 64.606±41.03 67.017±0.00 9.043±0.00 22.687±0.00 44.403±13.58 36.509±0.00 47.131±0.00 9.426±2.85 104.816±0.00 26.613±2.06 30.067±0.00
ENST00000557154 25.645±0.00 63.846±0.00 N/A 7.888±0.00 27.781±12.71 2.727±0.00 3.516±0.00 20.545±0.00 7.913±0.00 N/A 2.266±0.00 40.936±28.85 14.010±1.41 15.435±0.00
ENST00000557435 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557460 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000100652 ENST00000216540 N/A 0.134±0.00 N/A 0.105±0.01 0.266±0.19 0.019±0.00 0.055±0.01 30.439±30.43 7.285±7.08 0.029±0.00 N/A 0.019±0.01 0.041±0.02 0.050±0.01
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000021134 ENSMUST00000094693 56.990±13.46 47.812±12.94 75.364±7.62 54.498±14.62 35.681±3.34 53.098±12.32 22.479±6.09 44.472±6.22 58.916±30.80 69.182±11.15 21.766±6.21 103.147±25.00 49.046±10.46 38.085±7.72
ENSMUST00000110351 N/A 52.850±9.00 N/A N/A N/A 35.099±5.41 N/A N/A 34.037±9.28 N/A 15.087±0.00 N/A 22.124±0.00 N/A
ENSMUST00000110352 N/A N/A N/A N/A N/A N/A 35.304±0.00 N/A N/A N/A 26.454±0.00 53.562±0.00 37.200±0.00 N/A
ENSMUST00000110354 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000110356 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 14.028±0.00 N/A N/A N/A
ENSMUST00000125814 74.859±13.49 81.505±9.57 172.430±23.44 141.160±75.49 108.255±11.84 100.831±19.97 70.363±13.80 99.005±4.48 115.075±14.77 200.450±5.92 32.715±2.03 190.263±112.52 136.609±90.17 106.837±86.71
ENSMUST00000133783 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000138434 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000151036 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000151968 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000152662 71.899±5.98 33.919±0.00 N/A N/A 54.132±2.56 53.005±3.62 N/A N/A N/A 108.859±9.90 N/A 125.193±33.54 N/A 86.837±49.76
ENSMUST00000153056 51.148±9.72 43.369±4.96 154.921±39.49 53.788±35.31 45.016±4.61 48.903±3.14 20.009±5.91 35.974±4.30 74.143±39.51 81.915±7.81 17.403±3.51 69.220±19.46 34.658±18.15 26.142±3.60
ENSMUSG00000021135 ENSMUST00000095572 0.097±0.05 0.514±0.13 0.117±0.01 0.127±0.03 1.122±1.11 0.099±0.07 0.125±0.09 0.270±0.09 314.706±290.02 0.164±0.12 0.032±0.01 0.178±0.07 0.094±0.03 0.088±0.02

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