C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: serine/arginine-rich splicing factor 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000555547 SRSF5-007 ENSG00000100650 9606 + 14:69767186-69771654 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonHeartLiverLungMuscleOvaryPlacentaTestisENST00000555547
Transcript ID Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENST00000555547 2.034±0.00 8.563±0.00 6.583±0.00 15.473±0.00 2.999±0.27 32.298±8.02 6.903±0.33 61.825±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002M1 CIL_0002M1_0001 CGP 14:69611596-69772005
CIL_0000U3 CIL_0000U3_0001 CGP 14:69726900-69797289

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000133783 Srsf5-012 retained_intron Mus_musculus 0 2113
ENSMUST00000153056 Srsf5-005 retained_intron Mus_musculus 0 2098
ENSMUST00000151036 Srsf5-007 retained_intron Mus_musculus 0 1496
ENSMUST00000125814 Srsf5-006 processed_transcript Mus_musculus 0 1225
ENSMUST00000110351 Srsf5-003 protein_coding Mus_musculus 0 918
ENSMUST00000110354 Srsf5-009 protein_coding Mus_musculus 0 918
ENSMUST00000094693 Srsf5-201 protein_coding Mus_musculus 0 904
ENSMUST00000110356 Srsf5-004 protein_coding Mus_musculus 0 904
ENSMUST00000110352 Srsf5-001 protein_coding Mus_musculus 0 904
ENSMUST00000118024 Gm12966-001 processed_pseudogene Mus_musculus 0 632

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