C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: serine/arginine-rich splicing factor 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000557154 SRSF5-002 ENSG00000100650 9606 + 14:69767124-69771991 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisENST00000557154
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENST00000557154 25.645±0.00 63.846±0.00 7.888±0.00 27.781±12.71 2.727±0.00 3.516±0.00 20.545±0.00 7.913±0.00 2.266±0.00 40.936±28.85 14.010±1.41 15.435±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002M1 CIL_0002M1_0001 CGP 14:69611596-69772005
CIL_0000U3 CIL_0000U3_0001 CGP 14:69726900-69797289

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000398 TAS mRNA splicing, via spliceosome
GO:0003676 IEA nucleic acid binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0006369 TAS termination of RNA polymerase II transcription
GO:0006376 TAS mRNA splice site selection
GO:0006397 TAS mRNA processing
GO:0006406 TAS mRNA export from nucleus
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0016607 ISS nuclear speck
GO:0031124 TAS mRNA 3'-end processing
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000110354 Srsf5-009 protein_coding Mus_musculus 0 1930
ENSMUST00000110351 Srsf5-003 protein_coding Mus_musculus 0 1877
ENSMUST00000094693 Srsf5-201 protein_coding Mus_musculus 0 1862
ENSMUST00000110352 Srsf5-001 protein_coding Mus_musculus 0 1842
ENSMUST00000110356 Srsf5-004 protein_coding Mus_musculus 0 1781
ENSMUST00000133783 Srsf5-012 retained_intron Mus_musculus 0 1260
ENSMUST00000153056 Srsf5-005 retained_intron Mus_musculus 0 1247
ENSMUST00000118024 Gm12966-001 processed_pseudogene Mus_musculus 0 1133
ENSMUST00000151036 Srsf5-007 retained_intron Mus_musculus 0 963
ENSMUST00000125814 Srsf5-006 processed_transcript Mus_musculus 0 619

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