C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: serine/arginine-rich splicing factor 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000556184 SRSF5-006 ENSG00000100650 9606 + 14:69767172-69771642 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000556184
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000556184 7.198±0.00 19.945±0.00 14.185±0.00 17.920±5.59 14.406±11.68 5.846±1.18 18.252±1.37 20.770±0.00 21.585±11.77 15.932±2.72 4.157±0.00 17.747±11.81

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002M1 CIL_0002M1_0001 CGP 14:69611596-69772005
CIL_0000U3 CIL_0000U3_0001 CGP 14:69726900-69797289

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000153056 Srsf5-005 retained_intron Mus_musculus 0 2856
ENSMUST00000133783 Srsf5-012 retained_intron Mus_musculus 0 2460
ENSMUST00000151036 Srsf5-007 retained_intron Mus_musculus 0 2102
ENSMUST00000110351 Srsf5-003 protein_coding Mus_musculus 0 896
ENSMUST00000110354 Srsf5-009 protein_coding Mus_musculus 0 896
ENSMUST00000094693 Srsf5-201 protein_coding Mus_musculus 0 881
ENSMUST00000110356 Srsf5-004 protein_coding Mus_musculus 0 881
ENSMUST00000110352 Srsf5-001 protein_coding Mus_musculus 0 881
ENSMUST00000118024 Gm12966-001 processed_pseudogene Mus_musculus 0 632
ENSMUST00000125814 Srsf5-006 processed_transcript Mus_musculus 0 612
ENSMUST00000152662 Srsf5-008 processed_transcript Mus_musculus 0 405

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