C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: serine/arginine-rich splicing factor 5
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000021134 Srsf5 10090 + 12:80945504-80950507 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000094693 Srsf5-201 80945504-80950507 protein_coding
  ENSMUST00000110351 Srsf5-003 80945532-80950503 protein_coding
  ENSMUST00000110352 Srsf5-001 80945532-80950503 protein_coding
  ENSMUST00000110354 Srsf5-009 80945520-80950503 protein_coding
  ENSMUST00000110356 Srsf5-004 80945585-80950503 protein_coding
  ENSMUST00000125814 Srsf5-006 80945548-80948504 processed_transcript
  ENSMUST00000133783 Srsf5-012 80945520-80950503 retained_intron
  ENSMUST00000138434 Srsf5-010 80945570-80947528 nonsense_mediated_decay
  ENSMUST00000151036 Srsf5-007 80946376-80950497 retained_intron
  ENSMUST00000151968 Srsf5-011 80945579-80946970 processed_transcript
  ENSMUST00000152662 Srsf5-008 80945534-80946848 processed_transcript
  ENSMUST00000153056 Srsf5-005 80945532-80950503 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000094693ENSMUST00000110351ENSMUST00000110352ENSMUST00000110356ENSMUST00000125814ENSMUST00000152662ENSMUST00000153056
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000094693 56.990±13.46 47.812±12.94 75.364±7.62 54.498±14.62 35.681±3.34 53.098±12.32 22.479±6.09 44.472±6.22 58.916±30.80 69.182±11.15 21.766±6.21 103.147±25.00 49.046±10.46 38.085±7.72
ENSMUST00000110351 N/A 52.850±9.00 N/A N/A N/A 35.099±5.41 N/A N/A 34.037±9.28 N/A 15.087±0.00 N/A 22.124±0.00 N/A
ENSMUST00000110352 N/A N/A N/A N/A N/A N/A 35.304±0.00 N/A N/A N/A 26.454±0.00 53.562±0.00 37.200±0.00 N/A
ENSMUST00000110356 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 14.028±0.00 N/A N/A N/A
ENSMUST00000125814 74.859±13.49 81.505±9.57 172.430±23.44 141.160±75.49 108.255±11.84 100.831±19.97 70.363±13.80 99.005±4.48 115.075±14.77 200.450±5.92 32.715±2.03 190.263±112.52 136.609±90.17 106.837±86.71
ENSMUST00000152662 71.899±5.98 33.919±0.00 N/A N/A 54.132±2.56 53.005±3.62 N/A N/A N/A 108.859±9.90 N/A 125.193±33.54 N/A 86.837±49.76
ENSMUST00000153056 51.148±9.72 43.369±4.96 154.921±39.49 53.788±35.31 45.016±4.61 48.903±3.14 20.009±5.91 35.974±4.30 74.143±39.51 81.915±7.81 17.403±3.51 69.220±19.46 34.658±18.15 26.142±3.60

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002M1 CIL_0002M1_0002 CGP 12:80790532-80950507
CIL_0000U3 CIL_0000U3_0002 CGP 12:80945504-80968079

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005730 IEA nucleolus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing
GO:0009611 IDA response to wounding
GO:0016607 IDA nuclear speck
GO:0044822 IEA poly(A) RNA binding
GO:0050733 IPI RS domain binding
GO:0051726 IEA regulation of cell cycle

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000027734 srsf5b serine/arginine-rich splicing factor 5b protein_coding Danio_rerio
ENSG00000100650 SRSF5 serine/arginine-rich splicing factor 5 protein_coding Homo_sapiens

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