C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA binding motif protein 12
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000374104 RBM12-002 ENSG00000244462 9606 - 20:35650326-35664900 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000374104
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000374104 7.623±0.00 13.510±0.00 3.877±1.31 8.244±0.00 4.455±1.86 4.182±1.38 7.470±0.00 3.573±1.02 7.564±0.00 3.321±0.31 11.582±0.22 11.433±1.72 7.894±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005FU CIL_0005FU_0001 CGP 20:35615892-35664956
CIL_0006AA CIL_0006AA_0001 CGP 20:35648925-35699359

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0005634 IDA nucleus
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000109604 Rbm12-002 protein_coding Mus_musculus 0 3121
ENSMUST00000132494 Gm28036-001 nonsense_mediated_decay Mus_musculus 0 3042
ENSMUST00000059647 Rbm12-001 protein_coding Mus_musculus 0 2935
ENSMUST00000127956 Gm28036-002 nonsense_mediated_decay Mus_musculus 0 2338
ENSMUST00000131377 Rbm12-004 protein_coding Mus_musculus 0 1360
ENSMUST00000128499 Rbm12-005 protein_coding Mus_musculus 0 760
ENSMUST00000138068 Rbm12-006 protein_coding Mus_musculus 0 723
ENSMUST00000184899 Gm28036-004 nonsense_mediated_decay Mus_musculus 0 388
ENSMUST00000154889 Cpne1-012 protein_coding Mus_musculus 0 305
ENSMUST00000183518 Gm28036-003 protein_coding Mus_musculus 0 305
ENSMUST00000159952 Gm28036-008 nonsense_mediated_decay Mus_musculus 0 305
ENSMUST00000160165 Gm28036-007 nonsense_mediated_decay Mus_musculus 0 305
ENSMUST00000162612 Gm28036-006 nonsense_mediated_decay Mus_musculus 0 305
ENSMUST00000133921 Cpne1-011 protein_coding Mus_musculus 0 250
ENSMUST00000109608 Cpne1-001 protein_coding Mus_musculus 0 244
ENSMUST00000136296 Cpne1-005 protein_coding Mus_musculus 1.4013e-45 189
ENSMUST00000109607 Cpne1-002 protein_coding Mus_musculus 1.4013e-45 189
ENSMUST00000184265 Cpne1-015 protein_coding Mus_musculus 1.4013e-45 189
ENSMUST00000183972 Gm28036-005 nonsense_mediated_decay Mus_musculus 3e-34 152
ENSMUST00000142975 Cpne1-003 retained_intron Mus_musculus 1e-33 150
ENSMUST00000153634 Cpne1-010 protein_coding Mus_musculus 1e-23 117
ENSMUST00000147627 Cpne1-009 nonsense_mediated_decay Mus_musculus 7e-21 108
ENSMUST00000079312 Cpne1-008 protein_coding Mus_musculus 7e-21 108

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