C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA binding motif protein 12
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000424458 RBM12-004 ENSG00000244462 9606 - 20:35654450-35664889 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartLiverLungMuscleENST00000424458
Transcript ID Bladder Brain Breast Colon Heart Liver Lung Muscle
ENST00000424458 9.944±0.00 12.478±0.00 18.809±0.00 16.919±0.00 10.925±0.00 21.437±0.00 15.502±0.00 7.166±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005FU CIL_0005FU_0001 CGP 20:35615892-35664956
CIL_0006AA CIL_0006AA_0001 CGP 20:35648925-35699359

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0005634 IDA nucleus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000131377 Rbm12-004 protein_coding Mus_musculus 0 1483
ENSMUST00000059647 Rbm12-001 protein_coding Mus_musculus 0 1375
ENSMUST00000109604 Rbm12-002 protein_coding Mus_musculus 0 1371
ENSMUST00000132494 Gm28036-001 nonsense_mediated_decay Mus_musculus 0 1362
ENSMUST00000138068 Rbm12-006 protein_coding Mus_musculus 0 782
ENSMUST00000127956 Gm28036-002 nonsense_mediated_decay Mus_musculus 0 773
ENSMUST00000128499 Rbm12-005 protein_coding Mus_musculus 0 761
ENSMUST00000184899 Gm28036-004 nonsense_mediated_decay Mus_musculus 0 448
ENSMUST00000154889 Cpne1-012 protein_coding Mus_musculus 0 418
ENSMUST00000183518 Gm28036-003 protein_coding Mus_musculus 0 364
ENSMUST00000159952 Gm28036-008 nonsense_mediated_decay Mus_musculus 0 364
ENSMUST00000160165 Gm28036-007 nonsense_mediated_decay Mus_musculus 0 364
ENSMUST00000162612 Gm28036-006 nonsense_mediated_decay Mus_musculus 0 364
ENSMUST00000133921 Cpne1-011 protein_coding Mus_musculus 0 250
ENSMUST00000153634 Cpne1-010 protein_coding Mus_musculus 2e-24 117
ENSMUST00000136296 Cpne1-005 protein_coding Mus_musculus 2e-24 117
ENSMUST00000109608 Cpne1-001 protein_coding Mus_musculus 2e-24 117
ENSMUST00000109607 Cpne1-002 protein_coding Mus_musculus 2e-24 117
ENSMUST00000184265 Cpne1-015 protein_coding Mus_musculus 2e-24 117
ENSMUST00000147627 Cpne1-009 nonsense_mediated_decay Mus_musculus 1e-21 108
ENSMUST00000079312 Cpne1-008 protein_coding Mus_musculus 1e-21 108
ENSMUST00000142975 Cpne1-003 retained_intron Mus_musculus 1e-17 95

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