C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA binding motif protein 12
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000359646 RBM12-003 ENSG00000244462 9606 - 20:35650142-35664888 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBreastKidneyLungOvaryPlacentaTestisENST00000359646
Transcript ID Bladder Breast Kidney Lung Ovary Placenta Testis
ENST00000359646 1.855±0.00 4.497±0.00 1.804±0.00 4.991±0.00 14.697±10.62 11.841±0.00 10.923±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005FU CIL_0005FU_0001 CGP 20:35615892-35664956
CIL_0006AA CIL_0006AA_0001 CGP 20:35648925-35699359

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0005634 IDA nucleus
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000109604 Rbm12-002 protein_coding Mus_musculus 0 2880
ENSMUST00000059647 Rbm12-001 protein_coding Mus_musculus 0 2880
ENSMUST00000132494 Gm28036-001 nonsense_mediated_decay Mus_musculus 0 2826
ENSMUST00000127956 Gm28036-002 nonsense_mediated_decay Mus_musculus 0 2338
ENSMUST00000131377 Rbm12-004 protein_coding Mus_musculus 0 1254
ENSMUST00000128499 Rbm12-005 protein_coding Mus_musculus 0 704
ENSMUST00000138068 Rbm12-006 protein_coding Mus_musculus 0 667
ENSMUST00000184899 Gm28036-004 nonsense_mediated_decay Mus_musculus 0 333
ENSMUST00000154889 Cpne1-012 protein_coding Mus_musculus 0 250
ENSMUST00000133921 Cpne1-011 protein_coding Mus_musculus 0 250
ENSMUST00000183518 Gm28036-003 protein_coding Mus_musculus 0 250
ENSMUST00000159952 Gm28036-008 nonsense_mediated_decay Mus_musculus 0 250
ENSMUST00000160165 Gm28036-007 nonsense_mediated_decay Mus_musculus 0 250
ENSMUST00000162612 Gm28036-006 nonsense_mediated_decay Mus_musculus 0 250
ENSMUST00000109608 Cpne1-001 protein_coding Mus_musculus 7.00005e-41 174
ENSMUST00000136296 Cpne1-005 protein_coding Mus_musculus 3e-40 172
ENSMUST00000109607 Cpne1-002 protein_coding Mus_musculus 3e-40 172
ENSMUST00000184265 Cpne1-015 protein_coding Mus_musculus 3e-40 172
ENSMUST00000183972 Gm28036-005 nonsense_mediated_decay Mus_musculus 3e-34 152
ENSMUST00000142975 Cpne1-003 retained_intron Mus_musculus 1e-33 150
ENSMUST00000153634 Cpne1-010 protein_coding Mus_musculus 1e-23 117
ENSMUST00000147627 Cpne1-009 nonsense_mediated_decay Mus_musculus 7e-21 108
ENSMUST00000079312 Cpne1-008 protein_coding Mus_musculus 7e-21 108

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