C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA binding motif protein 12
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000128499 Rbm12-005 ENSMUSG00000089824 10090 - 2:156097921-156111978 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008EI CIL_0008EI_0002 VISTA 2:155562263-156164147
CIL_0005FU CIL_0005FU_0002 CGP 2:156065175-156111965
CIL_0006AA CIL_0006AA_0002 CGP 2:156091958-156144186

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000352393 CPNE1-004 protein_coding Homo_sapiens 0 305
ENST00000359646 RBM12-003 protein_coding Homo_sapiens 0 704
ENST00000374104 RBM12-002 protein_coding Homo_sapiens 0 760
ENST00000374114 RBM12-001 protein_coding Homo_sapiens 0 761
ENST00000414711 CPNE1-011 protein_coding Homo_sapiens 0 307
ENST00000424458 RBM12-004 protein_coding Homo_sapiens 0 761
ENST00000431148 RBM12-005 protein_coding Homo_sapiens 0 813
ENST00000435161 RBM12-006 protein_coding Homo_sapiens 0 725
ENST00000437100 CPNE1-010 protein_coding Homo_sapiens 0 307
ENST00000440240 CPNE1-012 protein_coding Homo_sapiens 0 250
ENST00000441563 RP1-309K20.6-003 nonsense_mediated_decay Homo_sapiens 0 307
ENST00000454607 RP1-309K20.6-002 nonsense_mediated_decay Homo_sapiens 0 307
ENST00000541176 RP1-309K20.6-001 nonsense_mediated_decay Homo_sapiens 0 307

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