C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
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| Description: | SRY (sex determining region Y)-box 5 | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENSMUST00000129050  |
Sox5-007 |
ENSMUSG00000041540 |
10090 | - |
6:143906572-144204427  |
retained_intron |
Expression PatternsNo expression data. |
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_0006Y0 | CIL_0006Y0_0003 | CGP | 6:143167230-144781977 |
| CIL_0007NR | CIL_0007NR_0002 | UCNEbase | 6:143260703-144754208 |
| CIL_0004XB | CIL_0004XB_0002 | CGP | 6:143828425-145076184 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| No GO terms available. | ||
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENSDART00000006737
|
sox5-201 | protein_coding | Danio_rerio | 2e-24 | 119 |
|
ENSDART00000134595
|
sox5-001 | protein_coding | Danio_rerio | 2e-24 | 119 |
|
ENST00000367206
|
SOX5-006 | nonsense_mediated_decay | Homo_sapiens | 0 | 1177 |
|
ENST00000381381
|
SOX5-201 | protein_coding | Homo_sapiens | 0 | 1177 |
|
ENST00000441133
|
SOX5-004 | protein_coding | Homo_sapiens | 0 | 473 |
|
ENST00000451604
|
SOX5-002 | protein_coding | Homo_sapiens | 0 | 1177 |
|
ENST00000535530
|
SOX5-014 | processed_transcript | Homo_sapiens | 0 | 608 |
|
ENST00000536629
|
SOX5-015 | processed_transcript | Homo_sapiens | 0 | 608 |
|
ENST00000536911
|
SOX5-013 | retained_intron | Homo_sapiens | 0 | 564 |
|
ENST00000537393
|
SOX5-008 | protein_coding | Homo_sapiens | 0 | 1382 |
|
ENST00000538083
|
SOX5-010 | protein_coding | Homo_sapiens | 0 | 259 |
|
ENST00000541536
|
SOX5-009 | protein_coding | Homo_sapiens | 0 | 1177 |
|
ENST00000541847
|
SOX5-016 | protein_coding | Homo_sapiens | 0 | 580 |
|
ENST00000542241
|
SOX5-012 | processed_transcript | Homo_sapiens | 0 | 231 |
|
ENST00000545921
|
SOX5-007 | protein_coding | Homo_sapiens | 0 | 1177 |
|
ENST00000546136
|
SOX5-003 | protein_coding | Homo_sapiens | 0 | 1177 |
