C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: SRY (sex determining region Y)-box 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000129050 Sox5-007 ENSMUSG00000041540 10090 - 6:143906572-144204427 retained_intron

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006Y0 CIL_0006Y0_0003 CGP 6:143167230-144781977
CIL_0007NR CIL_0007NR_0002 UCNEbase 6:143260703-144754208
CIL_0004XB CIL_0004XB_0002 CGP 6:143828425-145076184

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000006737 sox5-201 protein_coding Danio_rerio 2e-24 119
ENSDART00000134595 sox5-001 protein_coding Danio_rerio 2e-24 119
ENST00000367206 SOX5-006 nonsense_mediated_decay Homo_sapiens 0 1177
ENST00000381381 SOX5-201 protein_coding Homo_sapiens 0 1177
ENST00000441133 SOX5-004 protein_coding Homo_sapiens 0 473
ENST00000451604 SOX5-002 protein_coding Homo_sapiens 0 1177
ENST00000535530 SOX5-014 processed_transcript Homo_sapiens 0 608
ENST00000536629 SOX5-015 processed_transcript Homo_sapiens 0 608
ENST00000536911 SOX5-013 retained_intron Homo_sapiens 0 564
ENST00000537393 SOX5-008 protein_coding Homo_sapiens 0 1382
ENST00000538083 SOX5-010 protein_coding Homo_sapiens 0 259
ENST00000541536 SOX5-009 protein_coding Homo_sapiens 0 1177
ENST00000541847 SOX5-016 protein_coding Homo_sapiens 0 580
ENST00000542241 SOX5-012 processed_transcript Homo_sapiens 0 231
ENST00000545921 SOX5-007 protein_coding Homo_sapiens 0 1177
ENST00000546136 SOX5-003 protein_coding Homo_sapiens 0 1177

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