| Source ID |
Type |
Tax ID |
Position |
| SOX5 |
UCNEbase |
7955 |
4:15983315-16239186  |
| Gene | Transcript | Position | Biotype |
|---|
Notice (8): Undefined index: CIL_0007NR_0003 [APP/View/Region/show.ctp, line 46]Code Context <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_0007NR_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007NR_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSG00000115934' => null,
'ENSG00000134532' => 'SRY (sex determining region Y)-box 5',
'ENSG00000216192' => 'microRNA 920',
'ENSG00000255864' => null,
'ENSG00000256120' => null,
'ENSG00000256321' => null,
'ENSG00000256353' => null,
'ENSG00000256473' => null,
'ENSG00000256995' => null,
'ENSMUSG00000041540' => 'SRY (sex determining region Y)-box 5',
'ENSMUSG00000072677' => 'SRY (sex determining region Y)-box 5, intronic transcript',
'ENSMUSG00000072679' => 'DNA segment, Chr 6, ERATO Doi 474, expressed',
'ENSMUSG00000077241' => 'predicted gene, 23272',
'ENSMUSG00000084971' => 'RIKEN cDNA 4930579D09 gene',
'ENSMUSG00000085785' => 'SRY (sex determining region Y)-box 5, opposite strand 3',
'ENSMUSG00000086282' => 'SRY (sex determining region Y)-box 5, opposite strand 4',
'ENSMUSG00000086731' => 'SRY (sex determining region Y)-box 5, opposite strand 5',
'ENSMUSG00000086887' => 'RIKEN cDNA 1700060C16 gene',
'ENSMUSG00000087157' => 'SRY (sex determining region Y)-box 5, opposite strand 2',
'ENSMUSG00000087302' => 'SRY (sex determining region Y)-box 5, opposite strand 1',
'ENSDARG00000011582' => 'SRY-box containing gene 5'
),
'gene_name_arr' => array(
'ENSG00000115934' => 'RP11-153K16.2',
'ENSG00000134532' => 'SOX5',
'ENSG00000216192' => 'MIR920',
'ENSG00000255864' => 'RP11-444D3.1',
'ENSG00000256120' => 'RP11-778H2.1',
'ENSG00000256321' => 'RP11-153K16.1',
'ENSG00000256353' => 'RP11-686N4.1',
'ENSG00000256473' => 'RP11-437F6.1',
'ENSG00000256995' => 'RP11-114G22.1',
'ENSMUSG00000041540' => 'Sox5',
'ENSMUSG00000072677' => 'Sox5it',
'ENSMUSG00000072679' => 'D6Ertd474e',
'ENSMUSG00000077241' => 'Gm23272',
'ENSMUSG00000084971' => '4930579D09Rik',
'ENSMUSG00000085785' => 'Sox5os3',
'ENSMUSG00000086282' => 'Sox5os4',
'ENSMUSG00000086731' => 'Sox5os5',
'ENSMUSG00000086887' => '1700060C16Rik',
'ENSMUSG00000087157' => 'Sox5os2',
'ENSMUSG00000087302' => 'Sox5os1',
'ENSDARG00000011582' => 'sox5'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 2 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 13 => 'Adrenal',
(int) 25 => 'Bladder',
(int) 41 => 'Brain',
(int) 58 => 'Breast',
(int) 77 => 'Colon',
(int) 86 => 'Heart',
(int) 97 => 'Kidney',
(int) 110 => 'Liver',
(int) 127 => 'Lung',
(int) 144 => 'Muscle',
(int) 157 => 'Ovary',
(int) 186 => 'Placenta',
(int) 207 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 70,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENST00000538297' => array(
'start' => '23181334',
'end' => '23251499',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-153K16.2-001'
),
'ENST00000367206' => array(
'start' => '23536530',
'end' => '23950920',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'SOX5-006'
),
'ENST00000381381' => array(
'start' => '23532298',
'end' => '23949703',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SOX5-201'
),
'ENST00000396007' => array(
'start' => '23534034',
'end' => '23584612',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SOX5-001'
),
'ENST00000441133' => array(
'start' => '23762475',
'end' => '23951020',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SOX5-004'
),
'ENST00000451604' => array(
'start' => '23532352',
'end' => '23949703',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SOX5-002'
),
'ENST00000535530' => array(
'start' => '23563316',
'end' => '23738506',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SOX5-014'
),
'ENST00000536629' => array(
'start' => '23575813',
'end' => '23738506',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SOX5-015'
),
'ENST00000536850' => array(
'start' => '23920038',
'end' => '23949592',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SOX5-011'
),
'ENST00000536911' => array(
'start' => '23603921',
'end' => '23734715',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'SOX5-013'
),
'ENST00000537393' => array(
'start' => '23533683',
'end' => '23949647',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SOX5-008'
),
'ENST00000538083' => array(
'start' => '23845991',
'end' => '23944352',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SOX5-010'
),
'ENST00000541536' => array(
'start' => '23533787',
'end' => '23896027',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SOX5-009'
),
'ENST00000541847' => array(
'start' => '23740851',
'end' => '23950907',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SOX5-016'
),
'ENST00000542241' => array(
'start' => '23575659',
'end' => '23632194',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SOX5-012'
),
'ENST00000545921' => array(
'start' => '23534048',
'end' => '23951032',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SOX5-007'
),
'ENST00000546136' => array(
'start' => '23529500',
'end' => '23896026',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SOX5-003'
),
'ENST00000401373' => array(
'start' => '24212421',
'end' => '24212495',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'MIR920-201'
),
'ENST00000429944' => array(
'start' => '24277250',
'end' => '24562493',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-444D3.1-003'
),
'ENST00000446891' => array(
'start' => '24213342',
'end' => '24562487',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-444D3.1-006'
),
'ENST00000456299' => array(
'start' => '24331286',
'end' => '24562544',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-444D3.1-002'
),
'ENST00000536729' => array(
'start' => '24213343',
'end' => '24357430',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-444D3.1-005'
),
'ENST00000538905' => array(
'start' => '24367935',
'end' => '24562382',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-444D3.1-004'
),
'ENST00000540811' => array(
'start' => '24213256',
'end' => '24562590',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-444D3.1-001'
),
'ENST00000539583' => array(
'start' => '24223287',
'end' => '24237965',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-778H2.1-002'
),
'ENST00000540733' => array(
'start' => '24223271',
'end' => '24227508',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-778H2.1-001'
),
'ENST00000534841' => array(
'start' => '23175642',
'end' => '23188519',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-153K16.1-003'
),
'ENST00000541288' => array(
'start' => '23099368',
'end' => '23188538',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-153K16.1-001'
),
'ENST00000545400' => array(
'start' => '23175648',
'end' => '23191587',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-153K16.1-002'
),
'ENST00000541161' => array(
'start' => '23108458',
'end' => '23108493',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-686N4.1-001'
),
'ENST00000546118' => array(
'start' => '23637973',
'end' => '23638487',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-437F6.1-001'
),
'ENST00000413794' => array(
'start' => '22699859',
'end' => '22888043',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-114G22.1-001'
),
'ENST00000536744' => array(
'start' => '22699941',
'end' => '22888933',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-114G22.1-002'
),
'ENST00000538317' => array(
'start' => '22859475',
'end' => '22971008',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-114G22.1-003'
),
'ENST00000540895' => array(
'start' => '22964572',
'end' => '23174123',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-114G22.1-004'
),
'ENST00000540994' => array(
'start' => '23021787',
'end' => '23054241',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-114G22.1-005'
),
'ENST00000590328' => array(
'start' => '22787043',
'end' => '22888021',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-114G22.1-006'
),
'ENST00000590955' => array(
'start' => '22859165',
'end' => '22888021',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-114G22.1-008'
),
'ENST00000593117' => array(
'start' => '22859531',
'end' => '22888021',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-114G22.1-007'
),
'ENSMUST00000038815' => array(
'start' => '143828425',
'end' => '144209480',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Sox5-001'
),
'ENSMUST00000077160' => array(
'start' => '143828425',
'end' => '144209452',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Sox5-002'
),
'ENSMUST00000111746' => array(
'start' => '143839443',
'end' => '143947101',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Sox5-004'
),
'ENSMUST00000111748' => array(
'start' => '143828425',
'end' => '143947106',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Sox5-003'
),
'ENSMUST00000111749' => array(
'start' => '143828425',
'end' => '144209558',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Sox5-005'
),
'ENSMUST00000124233' => array(
'start' => '143841275',
'end' => '143947088',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Sox5-010'
),
'ENSMUST00000129050' => array(
'start' => '143906572',
'end' => '144204427',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Sox5-007'
),
'ENSMUST00000139478' => array(
'start' => '144116478',
'end' => '144204057',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Sox5-012'
),
'ENSMUST00000141102' => array(
'start' => '143843739',
'end' => '144781977',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Sox5-009'
),
'ENSMUST00000142294' => array(
'start' => '144021142',
'end' => '144209480',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Sox5-006'
),
'ENSMUST00000144289' => array(
'start' => '143844815',
'end' => '143947097',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Sox5-013'
),
'ENSMUST00000149451' => array(
'start' => '144104452',
'end' => '144781919',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Sox5-008'
),
'ENSMUST00000150087' => array(
'start' => '144154829',
'end' => '144209568',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Sox5-011'
),
'ENSMUST00000170367' => array(
'start' => '143828425',
'end' => '144209568',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Sox5-201'
),
'ENSMUST00000144026' => array(
'start' => '144670427',
'end' => '144672720',
'transcript_biotype' => 'sense_intronic',
'transcript_name' => 'Sox5it-001'
),
'ENSMUST00000100817' => array(
'start' => '143245893',
'end' => '143297272',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'D6Ertd474e-001'
),
'ENSMUST00000159793' => array(
'start' => '143245888',
'end' => '143249112',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'D6Ertd474e-005'
),
'ENSMUST00000160188' => array(
'start' => '143245888',
'end' => '143295708',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'D6Ertd474e-004'
),
'ENSMUST00000160951' => array(
'start' => '143286050',
'end' => '143296037',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'D6Ertd474e-002'
),
'ENSMUST00000161174' => array(
'start' => '143245893',
'end' => '143296073',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'D6Ertd474e-003'
),
'ENSMUST00000104053' => array(
'start' => '143465269',
'end' => '143465397',
'transcript_biotype' => 'snoRNA',
'transcript_name' => 'Gm23272-201'
),
'ENSMUST00000132321' => array(
'start' => '143533965',
'end' => '143535508',
'transcript_biotype' => 'lincRNA',
'transcript_name' => '4930579D09Rik-001'
),
'ENSMUST00000139351' => array(
'start' => '144672868',
'end' => '144693834',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Sox5os3-001'
),
'ENSMUST00000154167' => array(
'start' => '144679702',
'end' => '144693584',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Sox5os3-002'
),
'ENSMUST00000155562' => array(
'start' => '144720911',
'end' => '144759883',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Sox5os4-001'
),
'ENSMUST00000152192' => array(
'start' => '144723565',
'end' => '144724907',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Sox5os5-001'
),
'ENSMUST00000150559' => array(
'start' => '143593353',
'end' => '143651288',
'transcript_biotype' => 'lincRNA',
'transcript_name' => '1700060C16Rik-001'
),
'ENSMUST00000156443' => array(
'start' => '144481225',
'end' => '144501416',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Sox5os2-001'
),
'ENSMUST00000156994' => array(
'start' => '144021908',
'end' => '144023778',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Sox5os1-001'
),
'ENSDART00000006737' => array(
'start' => '16053213',
'end' => '16124134',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'sox5-201'
),
'ENSDART00000134595' => array(
'start' => '16050433',
'end' => '16123966',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'sox5-001'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_0007NR_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007NR_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_0007NR_0001' => array(
'genes_in_region' => array(
'ENSG00000115934' => array(
[maximum depth reached]
),
'ENSG00000134532' => array(
[maximum depth reached]
),
'ENSG00000255864' => array(
[maximum depth reached]
),
'ENSG00000256120' => array(
[maximum depth reached]
),
'ENSG00000256321' => array(
[maximum depth reached]
),
'ENSG00000256473' => array(
[maximum depth reached]
),
'ENSG00000256995' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Brain',
(int) 3 => 'Breast',
(int) 4 => 'Colon',
(int) 5 => 'Lung',
(int) 6 => 'Ovary',
(int) 7 => 'Testis',
(int) 8 => 'Bladder',
(int) 9 => 'Breast',
(int) 10 => 'Lung',
(int) 11 => 'Testis',
(int) 12 => 'Bladder',
(int) 13 => 'Kidney',
(int) 14 => 'Ovary',
(int) 15 => 'Lung',
(int) 16 => 'Ovary',
(int) 17 => 'Placenta',
(int) 18 => 'Heart',
(int) 19 => 'Ovary',
(int) 20 => 'Brain',
(int) 21 => 'Breast',
(int) 22 => 'Liver',
(int) 23 => 'Muscle',
(int) 24 => 'Placenta',
(int) 25 => 'Adrenal',
(int) 26 => 'Testis',
(int) 27 => 'Muscle',
(int) 28 => 'Ovary',
(int) 29 => 'Adrenal',
(int) 30 => 'Bladder',
(int) 31 => 'Brain',
(int) 32 => 'Breast',
(int) 33 => 'Colon',
(int) 34 => 'Heart',
(int) 35 => 'Kidney',
(int) 36 => 'Liver',
(int) 37 => 'Lung',
(int) 38 => 'Muscle',
(int) 39 => 'Ovary',
(int) 40 => 'Placenta',
(int) 41 => 'Testis',
(int) 42 => 'Muscle',
(int) 43 => 'Placenta',
(int) 44 => 'Adipose',
(int) 45 => 'Adrenal',
(int) 46 => 'Brain',
(int) 47 => 'Breast',
(int) 48 => 'Colon',
(int) 49 => 'Heart',
(int) 50 => 'Liver',
(int) 51 => 'Lung',
(int) 52 => 'Muscle',
(int) 53 => 'Ovary',
(int) 54 => 'Placenta',
(int) 55 => 'Testis',
(int) 56 => 'Liver',
(int) 57 => 'Testis',
(int) 58 => 'Adipose',
(int) 59 => 'Bladder',
(int) 60 => 'Brain',
(int) 61 => 'Breast',
(int) 62 => 'Colon',
(int) 63 => 'Kidney',
(int) 64 => 'Liver',
(int) 65 => 'Ovary',
(int) 66 => 'Adipose',
(int) 67 => 'Bladder',
(int) 68 => 'Brain',
(int) 69 => 'Ovary',
(int) 70 => 'Placenta',
(int) 71 => 'Testis',
(int) 72 => 'Adrenal',
(int) 73 => 'Bladder',
(int) 74 => 'Brain',
(int) 75 => 'Breast',
(int) 76 => 'Heart',
(int) 77 => 'Kidney',
(int) 78 => 'Liver',
(int) 79 => 'Lung',
(int) 80 => 'Ovary',
(int) 81 => 'Placenta',
(int) 82 => 'Adrenal',
(int) 83 => 'Breast',
(int) 84 => 'Ovary',
(int) 85 => 'Testis',
(int) 86 => 'Adipose',
(int) 87 => 'Colon',
(int) 88 => 'Testis',
(int) 89 => 'Testis',
(int) 90 => 'Testis',
(int) 91 => 'Brain',
(int) 92 => 'Ovary',
(int) 93 => 'Testis',
(int) 94 => 'Adipose',
(int) 95 => 'Brain',
(int) 96 => 'Colon',
(int) 97 => 'Ovary',
(int) 98 => 'Testis',
(int) 99 => 'Brain',
(int) 100 => 'Breast',
(int) 101 => 'Heart',
(int) 102 => 'Lung',
(int) 103 => 'Ovary',
(int) 104 => 'Testis',
(int) 105 => 'Adipose',
(int) 106 => 'Brain',
(int) 107 => 'Lung',
(int) 108 => 'Ovary',
(int) 109 => 'Testis',
(int) 110 => 'Adipose',
(int) 111 => 'Placenta',
(int) 112 => 'Testis',
(int) 113 => 'Lung'
)
),
'CIL_0007NR_0002' => array(
'genes_in_region' => array(
'ENSMUSG00000041540' => array(
[maximum depth reached]
),
'ENSMUSG00000072677' => array(
[maximum depth reached]
),
'ENSMUSG00000072679' => array(
[maximum depth reached]
),
'ENSMUSG00000084971' => array(
[maximum depth reached]
),
'ENSMUSG00000085785' => array(
[maximum depth reached]
),
'ENSMUSG00000086282' => array(
[maximum depth reached]
),
'ENSMUSG00000086731' => array(
[maximum depth reached]
),
'ENSMUSG00000086887' => array(
[maximum depth reached]
),
'ENSMUSG00000087157' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Bladder',
(int) 1 => 'Brain',
(int) 2 => 'Breast',
(int) 3 => 'Liver',
(int) 4 => 'Placenta',
(int) 5 => 'Brain',
(int) 6 => 'Breast',
(int) 7 => 'Heart',
(int) 8 => 'Ovary',
(int) 9 => 'Placenta',
(int) 10 => 'Adrenal',
(int) 11 => 'Breast',
(int) 12 => 'Colon',
(int) 13 => 'Kidney',
(int) 14 => 'Lung',
(int) 15 => 'Muscle',
(int) 16 => 'Ovary',
(int) 17 => 'Placenta',
(int) 18 => 'Testis',
(int) 19 => 'Adrenal',
(int) 20 => 'Bladder',
(int) 21 => 'Brain',
(int) 22 => 'Colon',
(int) 23 => 'Heart',
(int) 24 => 'Kidney',
(int) 25 => 'Liver',
(int) 26 => 'Muscle',
(int) 27 => 'Placenta',
(int) 28 => 'Brain',
(int) 29 => 'Muscle',
(int) 30 => 'Ovary',
(int) 31 => 'Placenta',
(int) 32 => 'Testis',
(int) 33 => 'Muscle',
(int) 34 => 'Bladder',
(int) 35 => 'Breast',
(int) 36 => 'Kidney',
(int) 37 => 'Liver',
(int) 38 => 'Lung',
(int) 39 => 'Muscle',
(int) 40 => 'Ovary',
(int) 41 => 'Placenta',
(int) 42 => 'Adrenal',
(int) 43 => 'Testis',
(int) 44 => 'Bladder',
(int) 45 => 'Brain',
(int) 46 => 'Breast',
(int) 47 => 'Liver',
(int) 48 => 'Lung',
(int) 49 => 'Ovary',
(int) 50 => 'Placenta',
(int) 51 => 'Testis',
(int) 52 => 'Adipose',
(int) 53 => 'Bladder',
(int) 54 => 'Brain',
(int) 55 => 'Breast',
(int) 56 => 'Colon',
(int) 57 => 'Heart',
(int) 58 => 'Kidney',
(int) 59 => 'Liver',
(int) 60 => 'Lung',
(int) 61 => 'Muscle',
(int) 62 => 'Ovary',
(int) 63 => 'Placenta',
(int) 64 => 'Ovary',
(int) 65 => 'Placenta',
(int) 66 => 'Ovary',
(int) 67 => 'Placenta',
(int) 68 => 'Adipose',
(int) 69 => 'Liver',
(int) 70 => 'Muscle',
(int) 71 => 'Ovary',
(int) 72 => 'Placenta',
(int) 73 => 'Bladder',
(int) 74 => 'Ovary',
(int) 75 => 'Lung',
(int) 76 => 'Testis',
(int) 77 => 'Adipose',
(int) 78 => 'Adrenal',
(int) 79 => 'Bladder',
(int) 80 => 'Breast',
(int) 81 => 'Heart',
(int) 82 => 'Kidney',
(int) 83 => 'Liver',
(int) 84 => 'Lung',
(int) 85 => 'Ovary',
(int) 86 => 'Testis',
(int) 87 => 'Adrenal',
(int) 88 => 'Bladder',
(int) 89 => 'Breast',
(int) 90 => 'Kidney',
(int) 91 => 'Liver',
(int) 92 => 'Lung',
(int) 93 => 'Muscle',
(int) 94 => 'Ovary',
(int) 95 => 'Adrenal',
(int) 96 => 'Breast',
(int) 97 => 'Kidney',
(int) 98 => 'Liver',
(int) 99 => 'Ovary',
(int) 100 => 'Placenta',
(int) 101 => 'Testis',
(int) 102 => 'Bladder',
(int) 103 => 'Adipose',
(int) 104 => 'Breast',
(int) 105 => 'Kidney',
(int) 106 => 'Liver',
(int) 107 => 'Ovary',
(int) 108 => 'Placenta',
(int) 109 => 'Testis',
(int) 110 => 'Adipose',
(int) 111 => 'Bladder',
(int) 112 => 'Heart',
(int) 113 => 'Liver',
(int) 114 => 'Lung'
)
)
)
$gene_desc_arr = array(
'ENSG00000115934' => null,
'ENSG00000134532' => 'SRY (sex determining region Y)-box 5',
'ENSG00000216192' => 'microRNA 920',
'ENSG00000255864' => null,
'ENSG00000256120' => null,
'ENSG00000256321' => null,
'ENSG00000256353' => null,
'ENSG00000256473' => null,
'ENSG00000256995' => null,
'ENSMUSG00000041540' => 'SRY (sex determining region Y)-box 5',
'ENSMUSG00000072677' => 'SRY (sex determining region Y)-box 5, intronic transcript',
'ENSMUSG00000072679' => 'DNA segment, Chr 6, ERATO Doi 474, expressed',
'ENSMUSG00000077241' => 'predicted gene, 23272',
'ENSMUSG00000084971' => 'RIKEN cDNA 4930579D09 gene',
'ENSMUSG00000085785' => 'SRY (sex determining region Y)-box 5, opposite strand 3',
'ENSMUSG00000086282' => 'SRY (sex determining region Y)-box 5, opposite strand 4',
'ENSMUSG00000086731' => 'SRY (sex determining region Y)-box 5, opposite strand 5',
'ENSMUSG00000086887' => 'RIKEN cDNA 1700060C16 gene',
'ENSMUSG00000087157' => 'SRY (sex determining region Y)-box 5, opposite strand 2',
'ENSMUSG00000087302' => 'SRY (sex determining region Y)-box 5, opposite strand 1',
'ENSDARG00000011582' => 'SRY-box containing gene 5'
)
$gene_name_arr = array(
'ENSG00000115934' => 'RP11-153K16.2',
'ENSG00000134532' => 'SOX5',
'ENSG00000216192' => 'MIR920',
'ENSG00000255864' => 'RP11-444D3.1',
'ENSG00000256120' => 'RP11-778H2.1',
'ENSG00000256321' => 'RP11-153K16.1',
'ENSG00000256353' => 'RP11-686N4.1',
'ENSG00000256473' => 'RP11-437F6.1',
'ENSG00000256995' => 'RP11-114G22.1',
'ENSMUSG00000041540' => 'Sox5',
'ENSMUSG00000072677' => 'Sox5it',
'ENSMUSG00000072679' => 'D6Ertd474e',
'ENSMUSG00000077241' => 'Gm23272',
'ENSMUSG00000084971' => '4930579D09Rik',
'ENSMUSG00000085785' => 'Sox5os3',
'ENSMUSG00000086282' => 'Sox5os4',
'ENSMUSG00000086731' => 'Sox5os5',
'ENSMUSG00000086887' => '1700060C16Rik',
'ENSMUSG00000087157' => 'Sox5os2',
'ENSMUSG00000087302' => 'Sox5os1',
'ENSDARG00000011582' => 'sox5'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007NR_0001',
'tax_id' => '9606',
'chromosome' => '12',
'seq_start' => '22767069',
'seq_end' => '24538480',
'region_length' => '1771411',
'region_type' => 'UCNEbase',
'el_id' => 'SOX5'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007NR_0002',
'tax_id' => '10090',
'chromosome' => '6',
'seq_start' => '143260703',
'seq_end' => '144754208',
'region_length' => '1493505',
'region_type' => 'UCNEbase',
'el_id' => 'SOX5'
)
),
(int) 2 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007NR_0003',
'tax_id' => '7955',
'chromosome' => '4',
'seq_start' => '15983315',
'seq_end' => '16239186',
'region_length' => '255871',
'region_type' => 'UCNEbase',
'el_id' => 'SOX5'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 13 => 'Adrenal',
(int) 25 => 'Bladder',
(int) 41 => 'Brain',
(int) 58 => 'Breast',
(int) 77 => 'Colon',
(int) 86 => 'Heart',
(int) 97 => 'Kidney',
(int) 110 => 'Liver',
(int) 127 => 'Lung',
(int) 144 => 'Muscle',
(int) 157 => 'Ovary',
(int) 186 => 'Placenta',
(int) 207 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 70
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENST00000538297' => array(
'start' => '23181334',
'end' => '23251499',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-153K16.2-001'
),
'ENST00000367206' => array(
'start' => '23536530',
'end' => '23950920',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'SOX5-006'
),
'ENST00000381381' => array(
'start' => '23532298',
'end' => '23949703',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SOX5-201'
),
'ENST00000396007' => array(
'start' => '23534034',
'end' => '23584612',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SOX5-001'
),
'ENST00000441133' => array(
'start' => '23762475',
'end' => '23951020',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SOX5-004'
),
'ENST00000451604' => array(
'start' => '23532352',
'end' => '23949703',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SOX5-002'
),
'ENST00000535530' => array(
'start' => '23563316',
'end' => '23738506',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SOX5-014'
),
'ENST00000536629' => array(
'start' => '23575813',
'end' => '23738506',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SOX5-015'
),
'ENST00000536850' => array(
'start' => '23920038',
'end' => '23949592',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SOX5-011'
),
'ENST00000536911' => array(
'start' => '23603921',
'end' => '23734715',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'SOX5-013'
),
'ENST00000537393' => array(
'start' => '23533683',
'end' => '23949647',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SOX5-008'
),
'ENST00000538083' => array(
'start' => '23845991',
'end' => '23944352',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SOX5-010'
),
'ENST00000541536' => array(
'start' => '23533787',
'end' => '23896027',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SOX5-009'
),
'ENST00000541847' => array(
'start' => '23740851',
'end' => '23950907',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SOX5-016'
),
'ENST00000542241' => array(
'start' => '23575659',
'end' => '23632194',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SOX5-012'
),
'ENST00000545921' => array(
'start' => '23534048',
'end' => '23951032',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SOX5-007'
),
'ENST00000546136' => array(
'start' => '23529500',
'end' => '23896026',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SOX5-003'
),
'ENST00000401373' => array(
'start' => '24212421',
'end' => '24212495',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'MIR920-201'
),
'ENST00000429944' => array(
'start' => '24277250',
'end' => '24562493',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-444D3.1-003'
),
'ENST00000446891' => array(
'start' => '24213342',
'end' => '24562487',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-444D3.1-006'
),
'ENST00000456299' => array(
'start' => '24331286',
'end' => '24562544',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-444D3.1-002'
),
'ENST00000536729' => array(
'start' => '24213343',
'end' => '24357430',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-444D3.1-005'
),
'ENST00000538905' => array(
'start' => '24367935',
'end' => '24562382',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-444D3.1-004'
),
'ENST00000540811' => array(
'start' => '24213256',
'end' => '24562590',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-444D3.1-001'
),
'ENST00000539583' => array(
'start' => '24223287',
'end' => '24237965',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-778H2.1-002'
),
'ENST00000540733' => array(
'start' => '24223271',
'end' => '24227508',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-778H2.1-001'
),
'ENST00000534841' => array(
'start' => '23175642',
'end' => '23188519',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-153K16.1-003'
),
'ENST00000541288' => array(
'start' => '23099368',
'end' => '23188538',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-153K16.1-001'
),
'ENST00000545400' => array(
'start' => '23175648',
'end' => '23191587',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-153K16.1-002'
),
'ENST00000541161' => array(
'start' => '23108458',
'end' => '23108493',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-686N4.1-001'
),
'ENST00000546118' => array(
'start' => '23637973',
'end' => '23638487',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-437F6.1-001'
),
'ENST00000413794' => array(
'start' => '22699859',
'end' => '22888043',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-114G22.1-001'
),
'ENST00000536744' => array(
'start' => '22699941',
'end' => '22888933',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-114G22.1-002'
),
'ENST00000538317' => array(
'start' => '22859475',
'end' => '22971008',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-114G22.1-003'
),
'ENST00000540895' => array(
'start' => '22964572',
'end' => '23174123',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-114G22.1-004'
),
'ENST00000540994' => array(
'start' => '23021787',
'end' => '23054241',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-114G22.1-005'
),
'ENST00000590328' => array(
'start' => '22787043',
'end' => '22888021',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-114G22.1-006'
),
'ENST00000590955' => array(
'start' => '22859165',
'end' => '22888021',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-114G22.1-008'
),
'ENST00000593117' => array(
'start' => '22859531',
'end' => '22888021',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-114G22.1-007'
),
'ENSMUST00000038815' => array(
'start' => '143828425',
'end' => '144209480',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Sox5-001'
),
'ENSMUST00000077160' => array(
'start' => '143828425',
'end' => '144209452',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Sox5-002'
),
'ENSMUST00000111746' => array(
'start' => '143839443',
'end' => '143947101',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Sox5-004'
),
'ENSMUST00000111748' => array(
'start' => '143828425',
'end' => '143947106',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Sox5-003'
),
'ENSMUST00000111749' => array(
'start' => '143828425',
'end' => '144209558',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Sox5-005'
),
'ENSMUST00000124233' => array(
'start' => '143841275',
'end' => '143947088',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Sox5-010'
),
'ENSMUST00000129050' => array(
'start' => '143906572',
'end' => '144204427',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Sox5-007'
),
'ENSMUST00000139478' => array(
'start' => '144116478',
'end' => '144204057',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Sox5-012'
),
'ENSMUST00000141102' => array(
'start' => '143843739',
'end' => '144781977',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Sox5-009'
),
'ENSMUST00000142294' => array(
'start' => '144021142',
'end' => '144209480',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Sox5-006'
),
'ENSMUST00000144289' => array(
'start' => '143844815',
'end' => '143947097',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Sox5-013'
),
'ENSMUST00000149451' => array(
'start' => '144104452',
'end' => '144781919',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Sox5-008'
),
'ENSMUST00000150087' => array(
'start' => '144154829',
'end' => '144209568',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Sox5-011'
),
'ENSMUST00000170367' => array(
'start' => '143828425',
'end' => '144209568',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Sox5-201'
),
'ENSMUST00000144026' => array(
'start' => '144670427',
'end' => '144672720',
'transcript_biotype' => 'sense_intronic',
'transcript_name' => 'Sox5it-001'
),
'ENSMUST00000100817' => array(
'start' => '143245893',
'end' => '143297272',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'D6Ertd474e-001'
),
'ENSMUST00000159793' => array(
'start' => '143245888',
'end' => '143249112',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'D6Ertd474e-005'
),
'ENSMUST00000160188' => array(
'start' => '143245888',
'end' => '143295708',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'D6Ertd474e-004'
),
'ENSMUST00000160951' => array(
'start' => '143286050',
'end' => '143296037',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'D6Ertd474e-002'
),
'ENSMUST00000161174' => array(
'start' => '143245893',
'end' => '143296073',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'D6Ertd474e-003'
),
'ENSMUST00000104053' => array(
'start' => '143465269',
'end' => '143465397',
'transcript_biotype' => 'snoRNA',
'transcript_name' => 'Gm23272-201'
),
'ENSMUST00000132321' => array(
'start' => '143533965',
'end' => '143535508',
'transcript_biotype' => 'lincRNA',
'transcript_name' => '4930579D09Rik-001'
),
'ENSMUST00000139351' => array(
'start' => '144672868',
'end' => '144693834',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Sox5os3-001'
),
'ENSMUST00000154167' => array(
'start' => '144679702',
'end' => '144693584',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Sox5os3-002'
),
'ENSMUST00000155562' => array(
'start' => '144720911',
'end' => '144759883',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Sox5os4-001'
),
'ENSMUST00000152192' => array(
'start' => '144723565',
'end' => '144724907',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Sox5os5-001'
),
'ENSMUST00000150559' => array(
'start' => '143593353',
'end' => '143651288',
'transcript_biotype' => 'lincRNA',
'transcript_name' => '1700060C16Rik-001'
),
'ENSMUST00000156443' => array(
'start' => '144481225',
'end' => '144501416',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Sox5os2-001'
),
'ENSMUST00000156994' => array(
'start' => '144021908',
'end' => '144023778',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Sox5os1-001'
),
'ENSDART00000006737' => array(
'start' => '16053213',
'end' => '16124134',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'sox5-201'
),
'ENSDART00000134595' => array(
'start' => '16050433',
'end' => '16123966',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'sox5-001'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_0007NR_0001' => array(
'genes_in_region' => array(
'ENSG00000115934' => array(
[maximum depth reached]
),
'ENSG00000134532' => array(
[maximum depth reached]
),
'ENSG00000255864' => array(
[maximum depth reached]
),
'ENSG00000256120' => array(
[maximum depth reached]
),
'ENSG00000256321' => array(
[maximum depth reached]
),
'ENSG00000256473' => array(
[maximum depth reached]
),
'ENSG00000256995' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Brain',
(int) 3 => 'Breast',
(int) 4 => 'Colon',
(int) 5 => 'Lung',
(int) 6 => 'Ovary',
(int) 7 => 'Testis',
(int) 8 => 'Bladder',
(int) 9 => 'Breast',
(int) 10 => 'Lung',
(int) 11 => 'Testis',
(int) 12 => 'Bladder',
(int) 13 => 'Kidney',
(int) 14 => 'Ovary',
(int) 15 => 'Lung',
(int) 16 => 'Ovary',
(int) 17 => 'Placenta',
(int) 18 => 'Heart',
(int) 19 => 'Ovary',
(int) 20 => 'Brain',
(int) 21 => 'Breast',
(int) 22 => 'Liver',
(int) 23 => 'Muscle',
(int) 24 => 'Placenta',
(int) 25 => 'Adrenal',
(int) 26 => 'Testis',
(int) 27 => 'Muscle',
(int) 28 => 'Ovary',
(int) 29 => 'Adrenal',
(int) 30 => 'Bladder',
(int) 31 => 'Brain',
(int) 32 => 'Breast',
(int) 33 => 'Colon',
(int) 34 => 'Heart',
(int) 35 => 'Kidney',
(int) 36 => 'Liver',
(int) 37 => 'Lung',
(int) 38 => 'Muscle',
(int) 39 => 'Ovary',
(int) 40 => 'Placenta',
(int) 41 => 'Testis',
(int) 42 => 'Muscle',
(int) 43 => 'Placenta',
(int) 44 => 'Adipose',
(int) 45 => 'Adrenal',
(int) 46 => 'Brain',
(int) 47 => 'Breast',
(int) 48 => 'Colon',
(int) 49 => 'Heart',
(int) 50 => 'Liver',
(int) 51 => 'Lung',
(int) 52 => 'Muscle',
(int) 53 => 'Ovary',
(int) 54 => 'Placenta',
(int) 55 => 'Testis',
(int) 56 => 'Liver',
(int) 57 => 'Testis',
(int) 58 => 'Adipose',
(int) 59 => 'Bladder',
(int) 60 => 'Brain',
(int) 61 => 'Breast',
(int) 62 => 'Colon',
(int) 63 => 'Kidney',
(int) 64 => 'Liver',
(int) 65 => 'Ovary',
(int) 66 => 'Adipose',
(int) 67 => 'Bladder',
(int) 68 => 'Brain',
(int) 69 => 'Ovary',
(int) 70 => 'Placenta',
(int) 71 => 'Testis',
(int) 72 => 'Adrenal',
(int) 73 => 'Bladder',
(int) 74 => 'Brain',
(int) 75 => 'Breast',
(int) 76 => 'Heart',
(int) 77 => 'Kidney',
(int) 78 => 'Liver',
(int) 79 => 'Lung',
(int) 80 => 'Ovary',
(int) 81 => 'Placenta',
(int) 82 => 'Adrenal',
(int) 83 => 'Breast',
(int) 84 => 'Ovary',
(int) 85 => 'Testis',
(int) 86 => 'Adipose',
(int) 87 => 'Colon',
(int) 88 => 'Testis',
(int) 89 => 'Testis',
(int) 90 => 'Testis',
(int) 91 => 'Brain',
(int) 92 => 'Ovary',
(int) 93 => 'Testis',
(int) 94 => 'Adipose',
(int) 95 => 'Brain',
(int) 96 => 'Colon',
(int) 97 => 'Ovary',
(int) 98 => 'Testis',
(int) 99 => 'Brain',
(int) 100 => 'Breast',
(int) 101 => 'Heart',
(int) 102 => 'Lung',
(int) 103 => 'Ovary',
(int) 104 => 'Testis',
(int) 105 => 'Adipose',
(int) 106 => 'Brain',
(int) 107 => 'Lung',
(int) 108 => 'Ovary',
(int) 109 => 'Testis',
(int) 110 => 'Adipose',
(int) 111 => 'Placenta',
(int) 112 => 'Testis',
(int) 113 => 'Lung'
)
),
'CIL_0007NR_0002' => array(
'genes_in_region' => array(
'ENSMUSG00000041540' => array(
[maximum depth reached]
),
'ENSMUSG00000072677' => array(
[maximum depth reached]
),
'ENSMUSG00000072679' => array(
[maximum depth reached]
),
'ENSMUSG00000084971' => array(
[maximum depth reached]
),
'ENSMUSG00000085785' => array(
[maximum depth reached]
),
'ENSMUSG00000086282' => array(
[maximum depth reached]
),
'ENSMUSG00000086731' => array(
[maximum depth reached]
),
'ENSMUSG00000086887' => array(
[maximum depth reached]
),
'ENSMUSG00000087157' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Bladder',
(int) 1 => 'Brain',
(int) 2 => 'Breast',
(int) 3 => 'Liver',
(int) 4 => 'Placenta',
(int) 5 => 'Brain',
(int) 6 => 'Breast',
(int) 7 => 'Heart',
(int) 8 => 'Ovary',
(int) 9 => 'Placenta',
(int) 10 => 'Adrenal',
(int) 11 => 'Breast',
(int) 12 => 'Colon',
(int) 13 => 'Kidney',
(int) 14 => 'Lung',
(int) 15 => 'Muscle',
(int) 16 => 'Ovary',
(int) 17 => 'Placenta',
(int) 18 => 'Testis',
(int) 19 => 'Adrenal',
(int) 20 => 'Bladder',
(int) 21 => 'Brain',
(int) 22 => 'Colon',
(int) 23 => 'Heart',
(int) 24 => 'Kidney',
(int) 25 => 'Liver',
(int) 26 => 'Muscle',
(int) 27 => 'Placenta',
(int) 28 => 'Brain',
(int) 29 => 'Muscle',
(int) 30 => 'Ovary',
(int) 31 => 'Placenta',
(int) 32 => 'Testis',
(int) 33 => 'Muscle',
(int) 34 => 'Bladder',
(int) 35 => 'Breast',
(int) 36 => 'Kidney',
(int) 37 => 'Liver',
(int) 38 => 'Lung',
(int) 39 => 'Muscle',
(int) 40 => 'Ovary',
(int) 41 => 'Placenta',
(int) 42 => 'Adrenal',
(int) 43 => 'Testis',
(int) 44 => 'Bladder',
(int) 45 => 'Brain',
(int) 46 => 'Breast',
(int) 47 => 'Liver',
(int) 48 => 'Lung',
(int) 49 => 'Ovary',
(int) 50 => 'Placenta',
(int) 51 => 'Testis',
(int) 52 => 'Adipose',
(int) 53 => 'Bladder',
(int) 54 => 'Brain',
(int) 55 => 'Breast',
(int) 56 => 'Colon',
(int) 57 => 'Heart',
(int) 58 => 'Kidney',
(int) 59 => 'Liver',
(int) 60 => 'Lung',
(int) 61 => 'Muscle',
(int) 62 => 'Ovary',
(int) 63 => 'Placenta',
(int) 64 => 'Ovary',
(int) 65 => 'Placenta',
(int) 66 => 'Ovary',
(int) 67 => 'Placenta',
(int) 68 => 'Adipose',
(int) 69 => 'Liver',
(int) 70 => 'Muscle',
(int) 71 => 'Ovary',
(int) 72 => 'Placenta',
(int) 73 => 'Bladder',
(int) 74 => 'Ovary',
(int) 75 => 'Lung',
(int) 76 => 'Testis',
(int) 77 => 'Adipose',
(int) 78 => 'Adrenal',
(int) 79 => 'Bladder',
(int) 80 => 'Breast',
(int) 81 => 'Heart',
(int) 82 => 'Kidney',
(int) 83 => 'Liver',
(int) 84 => 'Lung',
(int) 85 => 'Ovary',
(int) 86 => 'Testis',
(int) 87 => 'Adrenal',
(int) 88 => 'Bladder',
(int) 89 => 'Breast',
(int) 90 => 'Kidney',
(int) 91 => 'Liver',
(int) 92 => 'Lung',
(int) 93 => 'Muscle',
(int) 94 => 'Ovary',
(int) 95 => 'Adrenal',
(int) 96 => 'Breast',
(int) 97 => 'Kidney',
(int) 98 => 'Liver',
(int) 99 => 'Ovary',
(int) 100 => 'Placenta',
(int) 101 => 'Testis',
(int) 102 => 'Bladder',
(int) 103 => 'Adipose',
(int) 104 => 'Breast',
(int) 105 => 'Kidney',
(int) 106 => 'Liver',
(int) 107 => 'Ovary',
(int) 108 => 'Placenta',
(int) 109 => 'Testis',
(int) 110 => 'Adipose',
(int) 111 => 'Bladder',
(int) 112 => 'Heart',
(int) 113 => 'Liver',
(int) 114 => 'Lung'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_0007NR_0003',
'tax_id' => '7955',
'chromosome' => '4',
'seq_start' => '15983315',
'seq_end' => '16239186',
'region_length' => '255871',
'region_type' => 'UCNEbase',
'el_id' => 'SOX5'
)
)
$gene_el = array(
'ENSMUST00000156443' => array(
'Adipose' => array(
'average_FPKM' => '0.120',
'stddev_FPKM' => '0.05'
),
'Bladder' => array(
'average_FPKM' => '0.015',
'stddev_FPKM' => '0.00'
),
'Heart' => array(
'average_FPKM' => '0.120',
'stddev_FPKM' => '0.00'
),
'Liver' => array(
'average_FPKM' => '0.018',
'stddev_FPKM' => '0.00'
),
'Lung' => array(
'average_FPKM' => '0.088',
'stddev_FPKM' => '0.01'
)
)
)
$gene_key = 'ENSMUSG00000087157'
$is_first = false
$tran_el = array(
'Adipose' => array(
'average_FPKM' => '0.120',
'stddev_FPKM' => '0.05'
),
'Bladder' => array(
'average_FPKM' => '0.015',
'stddev_FPKM' => '0.00'
),
'Heart' => array(
'average_FPKM' => '0.120',
'stddev_FPKM' => '0.00'
),
'Liver' => array(
'average_FPKM' => '0.018',
'stddev_FPKM' => '0.00'
),
'Lung' => array(
'average_FPKM' => '0.088',
'stddev_FPKM' => '0.01'
)
)
$tran_key = 'ENSMUST00000156443'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
Warning (2): Invalid argument supplied for foreach() [APP/View/Region/show.ctp, line 46]Code Context <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_0007NR_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007NR_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSG00000115934' => null,
'ENSG00000134532' => 'SRY (sex determining region Y)-box 5',
'ENSG00000216192' => 'microRNA 920',
'ENSG00000255864' => null,
'ENSG00000256120' => null,
'ENSG00000256321' => null,
'ENSG00000256353' => null,
'ENSG00000256473' => null,
'ENSG00000256995' => null,
'ENSMUSG00000041540' => 'SRY (sex determining region Y)-box 5',
'ENSMUSG00000072677' => 'SRY (sex determining region Y)-box 5, intronic transcript',
'ENSMUSG00000072679' => 'DNA segment, Chr 6, ERATO Doi 474, expressed',
'ENSMUSG00000077241' => 'predicted gene, 23272',
'ENSMUSG00000084971' => 'RIKEN cDNA 4930579D09 gene',
'ENSMUSG00000085785' => 'SRY (sex determining region Y)-box 5, opposite strand 3',
'ENSMUSG00000086282' => 'SRY (sex determining region Y)-box 5, opposite strand 4',
'ENSMUSG00000086731' => 'SRY (sex determining region Y)-box 5, opposite strand 5',
'ENSMUSG00000086887' => 'RIKEN cDNA 1700060C16 gene',
'ENSMUSG00000087157' => 'SRY (sex determining region Y)-box 5, opposite strand 2',
'ENSMUSG00000087302' => 'SRY (sex determining region Y)-box 5, opposite strand 1',
'ENSDARG00000011582' => 'SRY-box containing gene 5'
),
'gene_name_arr' => array(
'ENSG00000115934' => 'RP11-153K16.2',
'ENSG00000134532' => 'SOX5',
'ENSG00000216192' => 'MIR920',
'ENSG00000255864' => 'RP11-444D3.1',
'ENSG00000256120' => 'RP11-778H2.1',
'ENSG00000256321' => 'RP11-153K16.1',
'ENSG00000256353' => 'RP11-686N4.1',
'ENSG00000256473' => 'RP11-437F6.1',
'ENSG00000256995' => 'RP11-114G22.1',
'ENSMUSG00000041540' => 'Sox5',
'ENSMUSG00000072677' => 'Sox5it',
'ENSMUSG00000072679' => 'D6Ertd474e',
'ENSMUSG00000077241' => 'Gm23272',
'ENSMUSG00000084971' => '4930579D09Rik',
'ENSMUSG00000085785' => 'Sox5os3',
'ENSMUSG00000086282' => 'Sox5os4',
'ENSMUSG00000086731' => 'Sox5os5',
'ENSMUSG00000086887' => '1700060C16Rik',
'ENSMUSG00000087157' => 'Sox5os2',
'ENSMUSG00000087302' => 'Sox5os1',
'ENSDARG00000011582' => 'sox5'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 2 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 13 => 'Adrenal',
(int) 25 => 'Bladder',
(int) 41 => 'Brain',
(int) 58 => 'Breast',
(int) 77 => 'Colon',
(int) 86 => 'Heart',
(int) 97 => 'Kidney',
(int) 110 => 'Liver',
(int) 127 => 'Lung',
(int) 144 => 'Muscle',
(int) 157 => 'Ovary',
(int) 186 => 'Placenta',
(int) 207 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 70,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENST00000538297' => array(
'start' => '23181334',
'end' => '23251499',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-153K16.2-001'
),
'ENST00000367206' => array(
'start' => '23536530',
'end' => '23950920',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'SOX5-006'
),
'ENST00000381381' => array(
'start' => '23532298',
'end' => '23949703',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SOX5-201'
),
'ENST00000396007' => array(
'start' => '23534034',
'end' => '23584612',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SOX5-001'
),
'ENST00000441133' => array(
'start' => '23762475',
'end' => '23951020',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SOX5-004'
),
'ENST00000451604' => array(
'start' => '23532352',
'end' => '23949703',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SOX5-002'
),
'ENST00000535530' => array(
'start' => '23563316',
'end' => '23738506',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SOX5-014'
),
'ENST00000536629' => array(
'start' => '23575813',
'end' => '23738506',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SOX5-015'
),
'ENST00000536850' => array(
'start' => '23920038',
'end' => '23949592',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SOX5-011'
),
'ENST00000536911' => array(
'start' => '23603921',
'end' => '23734715',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'SOX5-013'
),
'ENST00000537393' => array(
'start' => '23533683',
'end' => '23949647',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SOX5-008'
),
'ENST00000538083' => array(
'start' => '23845991',
'end' => '23944352',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SOX5-010'
),
'ENST00000541536' => array(
'start' => '23533787',
'end' => '23896027',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SOX5-009'
),
'ENST00000541847' => array(
'start' => '23740851',
'end' => '23950907',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SOX5-016'
),
'ENST00000542241' => array(
'start' => '23575659',
'end' => '23632194',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SOX5-012'
),
'ENST00000545921' => array(
'start' => '23534048',
'end' => '23951032',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SOX5-007'
),
'ENST00000546136' => array(
'start' => '23529500',
'end' => '23896026',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SOX5-003'
),
'ENST00000401373' => array(
'start' => '24212421',
'end' => '24212495',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'MIR920-201'
),
'ENST00000429944' => array(
'start' => '24277250',
'end' => '24562493',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-444D3.1-003'
),
'ENST00000446891' => array(
'start' => '24213342',
'end' => '24562487',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-444D3.1-006'
),
'ENST00000456299' => array(
'start' => '24331286',
'end' => '24562544',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-444D3.1-002'
),
'ENST00000536729' => array(
'start' => '24213343',
'end' => '24357430',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-444D3.1-005'
),
'ENST00000538905' => array(
'start' => '24367935',
'end' => '24562382',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-444D3.1-004'
),
'ENST00000540811' => array(
'start' => '24213256',
'end' => '24562590',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-444D3.1-001'
),
'ENST00000539583' => array(
'start' => '24223287',
'end' => '24237965',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-778H2.1-002'
),
'ENST00000540733' => array(
'start' => '24223271',
'end' => '24227508',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-778H2.1-001'
),
'ENST00000534841' => array(
'start' => '23175642',
'end' => '23188519',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-153K16.1-003'
),
'ENST00000541288' => array(
'start' => '23099368',
'end' => '23188538',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-153K16.1-001'
),
'ENST00000545400' => array(
'start' => '23175648',
'end' => '23191587',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-153K16.1-002'
),
'ENST00000541161' => array(
'start' => '23108458',
'end' => '23108493',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-686N4.1-001'
),
'ENST00000546118' => array(
'start' => '23637973',
'end' => '23638487',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-437F6.1-001'
),
'ENST00000413794' => array(
'start' => '22699859',
'end' => '22888043',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-114G22.1-001'
),
'ENST00000536744' => array(
'start' => '22699941',
'end' => '22888933',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-114G22.1-002'
),
'ENST00000538317' => array(
'start' => '22859475',
'end' => '22971008',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-114G22.1-003'
),
'ENST00000540895' => array(
'start' => '22964572',
'end' => '23174123',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-114G22.1-004'
),
'ENST00000540994' => array(
'start' => '23021787',
'end' => '23054241',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-114G22.1-005'
),
'ENST00000590328' => array(
'start' => '22787043',
'end' => '22888021',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-114G22.1-006'
),
'ENST00000590955' => array(
'start' => '22859165',
'end' => '22888021',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-114G22.1-008'
),
'ENST00000593117' => array(
'start' => '22859531',
'end' => '22888021',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-114G22.1-007'
),
'ENSMUST00000038815' => array(
'start' => '143828425',
'end' => '144209480',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Sox5-001'
),
'ENSMUST00000077160' => array(
'start' => '143828425',
'end' => '144209452',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Sox5-002'
),
'ENSMUST00000111746' => array(
'start' => '143839443',
'end' => '143947101',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Sox5-004'
),
'ENSMUST00000111748' => array(
'start' => '143828425',
'end' => '143947106',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Sox5-003'
),
'ENSMUST00000111749' => array(
'start' => '143828425',
'end' => '144209558',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Sox5-005'
),
'ENSMUST00000124233' => array(
'start' => '143841275',
'end' => '143947088',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Sox5-010'
),
'ENSMUST00000129050' => array(
'start' => '143906572',
'end' => '144204427',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Sox5-007'
),
'ENSMUST00000139478' => array(
'start' => '144116478',
'end' => '144204057',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Sox5-012'
),
'ENSMUST00000141102' => array(
'start' => '143843739',
'end' => '144781977',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Sox5-009'
),
'ENSMUST00000142294' => array(
'start' => '144021142',
'end' => '144209480',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Sox5-006'
),
'ENSMUST00000144289' => array(
'start' => '143844815',
'end' => '143947097',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Sox5-013'
),
'ENSMUST00000149451' => array(
'start' => '144104452',
'end' => '144781919',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Sox5-008'
),
'ENSMUST00000150087' => array(
'start' => '144154829',
'end' => '144209568',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Sox5-011'
),
'ENSMUST00000170367' => array(
'start' => '143828425',
'end' => '144209568',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Sox5-201'
),
'ENSMUST00000144026' => array(
'start' => '144670427',
'end' => '144672720',
'transcript_biotype' => 'sense_intronic',
'transcript_name' => 'Sox5it-001'
),
'ENSMUST00000100817' => array(
'start' => '143245893',
'end' => '143297272',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'D6Ertd474e-001'
),
'ENSMUST00000159793' => array(
'start' => '143245888',
'end' => '143249112',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'D6Ertd474e-005'
),
'ENSMUST00000160188' => array(
'start' => '143245888',
'end' => '143295708',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'D6Ertd474e-004'
),
'ENSMUST00000160951' => array(
'start' => '143286050',
'end' => '143296037',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'D6Ertd474e-002'
),
'ENSMUST00000161174' => array(
'start' => '143245893',
'end' => '143296073',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'D6Ertd474e-003'
),
'ENSMUST00000104053' => array(
'start' => '143465269',
'end' => '143465397',
'transcript_biotype' => 'snoRNA',
'transcript_name' => 'Gm23272-201'
),
'ENSMUST00000132321' => array(
'start' => '143533965',
'end' => '143535508',
'transcript_biotype' => 'lincRNA',
'transcript_name' => '4930579D09Rik-001'
),
'ENSMUST00000139351' => array(
'start' => '144672868',
'end' => '144693834',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Sox5os3-001'
),
'ENSMUST00000154167' => array(
'start' => '144679702',
'end' => '144693584',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Sox5os3-002'
),
'ENSMUST00000155562' => array(
'start' => '144720911',
'end' => '144759883',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Sox5os4-001'
),
'ENSMUST00000152192' => array(
'start' => '144723565',
'end' => '144724907',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Sox5os5-001'
),
'ENSMUST00000150559' => array(
'start' => '143593353',
'end' => '143651288',
'transcript_biotype' => 'lincRNA',
'transcript_name' => '1700060C16Rik-001'
),
'ENSMUST00000156443' => array(
'start' => '144481225',
'end' => '144501416',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Sox5os2-001'
),
'ENSMUST00000156994' => array(
'start' => '144021908',
'end' => '144023778',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Sox5os1-001'
),
'ENSDART00000006737' => array(
'start' => '16053213',
'end' => '16124134',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'sox5-201'
),
'ENSDART00000134595' => array(
'start' => '16050433',
'end' => '16123966',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'sox5-001'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_0007NR_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007NR_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_0007NR_0001' => array(
'genes_in_region' => array(
'ENSG00000115934' => array(
[maximum depth reached]
),
'ENSG00000134532' => array(
[maximum depth reached]
),
'ENSG00000255864' => array(
[maximum depth reached]
),
'ENSG00000256120' => array(
[maximum depth reached]
),
'ENSG00000256321' => array(
[maximum depth reached]
),
'ENSG00000256473' => array(
[maximum depth reached]
),
'ENSG00000256995' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Brain',
(int) 3 => 'Breast',
(int) 4 => 'Colon',
(int) 5 => 'Lung',
(int) 6 => 'Ovary',
(int) 7 => 'Testis',
(int) 8 => 'Bladder',
(int) 9 => 'Breast',
(int) 10 => 'Lung',
(int) 11 => 'Testis',
(int) 12 => 'Bladder',
(int) 13 => 'Kidney',
(int) 14 => 'Ovary',
(int) 15 => 'Lung',
(int) 16 => 'Ovary',
(int) 17 => 'Placenta',
(int) 18 => 'Heart',
(int) 19 => 'Ovary',
(int) 20 => 'Brain',
(int) 21 => 'Breast',
(int) 22 => 'Liver',
(int) 23 => 'Muscle',
(int) 24 => 'Placenta',
(int) 25 => 'Adrenal',
(int) 26 => 'Testis',
(int) 27 => 'Muscle',
(int) 28 => 'Ovary',
(int) 29 => 'Adrenal',
(int) 30 => 'Bladder',
(int) 31 => 'Brain',
(int) 32 => 'Breast',
(int) 33 => 'Colon',
(int) 34 => 'Heart',
(int) 35 => 'Kidney',
(int) 36 => 'Liver',
(int) 37 => 'Lung',
(int) 38 => 'Muscle',
(int) 39 => 'Ovary',
(int) 40 => 'Placenta',
(int) 41 => 'Testis',
(int) 42 => 'Muscle',
(int) 43 => 'Placenta',
(int) 44 => 'Adipose',
(int) 45 => 'Adrenal',
(int) 46 => 'Brain',
(int) 47 => 'Breast',
(int) 48 => 'Colon',
(int) 49 => 'Heart',
(int) 50 => 'Liver',
(int) 51 => 'Lung',
(int) 52 => 'Muscle',
(int) 53 => 'Ovary',
(int) 54 => 'Placenta',
(int) 55 => 'Testis',
(int) 56 => 'Liver',
(int) 57 => 'Testis',
(int) 58 => 'Adipose',
(int) 59 => 'Bladder',
(int) 60 => 'Brain',
(int) 61 => 'Breast',
(int) 62 => 'Colon',
(int) 63 => 'Kidney',
(int) 64 => 'Liver',
(int) 65 => 'Ovary',
(int) 66 => 'Adipose',
(int) 67 => 'Bladder',
(int) 68 => 'Brain',
(int) 69 => 'Ovary',
(int) 70 => 'Placenta',
(int) 71 => 'Testis',
(int) 72 => 'Adrenal',
(int) 73 => 'Bladder',
(int) 74 => 'Brain',
(int) 75 => 'Breast',
(int) 76 => 'Heart',
(int) 77 => 'Kidney',
(int) 78 => 'Liver',
(int) 79 => 'Lung',
(int) 80 => 'Ovary',
(int) 81 => 'Placenta',
(int) 82 => 'Adrenal',
(int) 83 => 'Breast',
(int) 84 => 'Ovary',
(int) 85 => 'Testis',
(int) 86 => 'Adipose',
(int) 87 => 'Colon',
(int) 88 => 'Testis',
(int) 89 => 'Testis',
(int) 90 => 'Testis',
(int) 91 => 'Brain',
(int) 92 => 'Ovary',
(int) 93 => 'Testis',
(int) 94 => 'Adipose',
(int) 95 => 'Brain',
(int) 96 => 'Colon',
(int) 97 => 'Ovary',
(int) 98 => 'Testis',
(int) 99 => 'Brain',
(int) 100 => 'Breast',
(int) 101 => 'Heart',
(int) 102 => 'Lung',
(int) 103 => 'Ovary',
(int) 104 => 'Testis',
(int) 105 => 'Adipose',
(int) 106 => 'Brain',
(int) 107 => 'Lung',
(int) 108 => 'Ovary',
(int) 109 => 'Testis',
(int) 110 => 'Adipose',
(int) 111 => 'Placenta',
(int) 112 => 'Testis',
(int) 113 => 'Lung'
)
),
'CIL_0007NR_0002' => array(
'genes_in_region' => array(
'ENSMUSG00000041540' => array(
[maximum depth reached]
),
'ENSMUSG00000072677' => array(
[maximum depth reached]
),
'ENSMUSG00000072679' => array(
[maximum depth reached]
),
'ENSMUSG00000084971' => array(
[maximum depth reached]
),
'ENSMUSG00000085785' => array(
[maximum depth reached]
),
'ENSMUSG00000086282' => array(
[maximum depth reached]
),
'ENSMUSG00000086731' => array(
[maximum depth reached]
),
'ENSMUSG00000086887' => array(
[maximum depth reached]
),
'ENSMUSG00000087157' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Bladder',
(int) 1 => 'Brain',
(int) 2 => 'Breast',
(int) 3 => 'Liver',
(int) 4 => 'Placenta',
(int) 5 => 'Brain',
(int) 6 => 'Breast',
(int) 7 => 'Heart',
(int) 8 => 'Ovary',
(int) 9 => 'Placenta',
(int) 10 => 'Adrenal',
(int) 11 => 'Breast',
(int) 12 => 'Colon',
(int) 13 => 'Kidney',
(int) 14 => 'Lung',
(int) 15 => 'Muscle',
(int) 16 => 'Ovary',
(int) 17 => 'Placenta',
(int) 18 => 'Testis',
(int) 19 => 'Adrenal',
(int) 20 => 'Bladder',
(int) 21 => 'Brain',
(int) 22 => 'Colon',
(int) 23 => 'Heart',
(int) 24 => 'Kidney',
(int) 25 => 'Liver',
(int) 26 => 'Muscle',
(int) 27 => 'Placenta',
(int) 28 => 'Brain',
(int) 29 => 'Muscle',
(int) 30 => 'Ovary',
(int) 31 => 'Placenta',
(int) 32 => 'Testis',
(int) 33 => 'Muscle',
(int) 34 => 'Bladder',
(int) 35 => 'Breast',
(int) 36 => 'Kidney',
(int) 37 => 'Liver',
(int) 38 => 'Lung',
(int) 39 => 'Muscle',
(int) 40 => 'Ovary',
(int) 41 => 'Placenta',
(int) 42 => 'Adrenal',
(int) 43 => 'Testis',
(int) 44 => 'Bladder',
(int) 45 => 'Brain',
(int) 46 => 'Breast',
(int) 47 => 'Liver',
(int) 48 => 'Lung',
(int) 49 => 'Ovary',
(int) 50 => 'Placenta',
(int) 51 => 'Testis',
(int) 52 => 'Adipose',
(int) 53 => 'Bladder',
(int) 54 => 'Brain',
(int) 55 => 'Breast',
(int) 56 => 'Colon',
(int) 57 => 'Heart',
(int) 58 => 'Kidney',
(int) 59 => 'Liver',
(int) 60 => 'Lung',
(int) 61 => 'Muscle',
(int) 62 => 'Ovary',
(int) 63 => 'Placenta',
(int) 64 => 'Ovary',
(int) 65 => 'Placenta',
(int) 66 => 'Ovary',
(int) 67 => 'Placenta',
(int) 68 => 'Adipose',
(int) 69 => 'Liver',
(int) 70 => 'Muscle',
(int) 71 => 'Ovary',
(int) 72 => 'Placenta',
(int) 73 => 'Bladder',
(int) 74 => 'Ovary',
(int) 75 => 'Lung',
(int) 76 => 'Testis',
(int) 77 => 'Adipose',
(int) 78 => 'Adrenal',
(int) 79 => 'Bladder',
(int) 80 => 'Breast',
(int) 81 => 'Heart',
(int) 82 => 'Kidney',
(int) 83 => 'Liver',
(int) 84 => 'Lung',
(int) 85 => 'Ovary',
(int) 86 => 'Testis',
(int) 87 => 'Adrenal',
(int) 88 => 'Bladder',
(int) 89 => 'Breast',
(int) 90 => 'Kidney',
(int) 91 => 'Liver',
(int) 92 => 'Lung',
(int) 93 => 'Muscle',
(int) 94 => 'Ovary',
(int) 95 => 'Adrenal',
(int) 96 => 'Breast',
(int) 97 => 'Kidney',
(int) 98 => 'Liver',
(int) 99 => 'Ovary',
(int) 100 => 'Placenta',
(int) 101 => 'Testis',
(int) 102 => 'Bladder',
(int) 103 => 'Adipose',
(int) 104 => 'Breast',
(int) 105 => 'Kidney',
(int) 106 => 'Liver',
(int) 107 => 'Ovary',
(int) 108 => 'Placenta',
(int) 109 => 'Testis',
(int) 110 => 'Adipose',
(int) 111 => 'Bladder',
(int) 112 => 'Heart',
(int) 113 => 'Liver',
(int) 114 => 'Lung'
)
)
)
$gene_desc_arr = array(
'ENSG00000115934' => null,
'ENSG00000134532' => 'SRY (sex determining region Y)-box 5',
'ENSG00000216192' => 'microRNA 920',
'ENSG00000255864' => null,
'ENSG00000256120' => null,
'ENSG00000256321' => null,
'ENSG00000256353' => null,
'ENSG00000256473' => null,
'ENSG00000256995' => null,
'ENSMUSG00000041540' => 'SRY (sex determining region Y)-box 5',
'ENSMUSG00000072677' => 'SRY (sex determining region Y)-box 5, intronic transcript',
'ENSMUSG00000072679' => 'DNA segment, Chr 6, ERATO Doi 474, expressed',
'ENSMUSG00000077241' => 'predicted gene, 23272',
'ENSMUSG00000084971' => 'RIKEN cDNA 4930579D09 gene',
'ENSMUSG00000085785' => 'SRY (sex determining region Y)-box 5, opposite strand 3',
'ENSMUSG00000086282' => 'SRY (sex determining region Y)-box 5, opposite strand 4',
'ENSMUSG00000086731' => 'SRY (sex determining region Y)-box 5, opposite strand 5',
'ENSMUSG00000086887' => 'RIKEN cDNA 1700060C16 gene',
'ENSMUSG00000087157' => 'SRY (sex determining region Y)-box 5, opposite strand 2',
'ENSMUSG00000087302' => 'SRY (sex determining region Y)-box 5, opposite strand 1',
'ENSDARG00000011582' => 'SRY-box containing gene 5'
)
$gene_name_arr = array(
'ENSG00000115934' => 'RP11-153K16.2',
'ENSG00000134532' => 'SOX5',
'ENSG00000216192' => 'MIR920',
'ENSG00000255864' => 'RP11-444D3.1',
'ENSG00000256120' => 'RP11-778H2.1',
'ENSG00000256321' => 'RP11-153K16.1',
'ENSG00000256353' => 'RP11-686N4.1',
'ENSG00000256473' => 'RP11-437F6.1',
'ENSG00000256995' => 'RP11-114G22.1',
'ENSMUSG00000041540' => 'Sox5',
'ENSMUSG00000072677' => 'Sox5it',
'ENSMUSG00000072679' => 'D6Ertd474e',
'ENSMUSG00000077241' => 'Gm23272',
'ENSMUSG00000084971' => '4930579D09Rik',
'ENSMUSG00000085785' => 'Sox5os3',
'ENSMUSG00000086282' => 'Sox5os4',
'ENSMUSG00000086731' => 'Sox5os5',
'ENSMUSG00000086887' => '1700060C16Rik',
'ENSMUSG00000087157' => 'Sox5os2',
'ENSMUSG00000087302' => 'Sox5os1',
'ENSDARG00000011582' => 'sox5'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007NR_0001',
'tax_id' => '9606',
'chromosome' => '12',
'seq_start' => '22767069',
'seq_end' => '24538480',
'region_length' => '1771411',
'region_type' => 'UCNEbase',
'el_id' => 'SOX5'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007NR_0002',
'tax_id' => '10090',
'chromosome' => '6',
'seq_start' => '143260703',
'seq_end' => '144754208',
'region_length' => '1493505',
'region_type' => 'UCNEbase',
'el_id' => 'SOX5'
)
),
(int) 2 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007NR_0003',
'tax_id' => '7955',
'chromosome' => '4',
'seq_start' => '15983315',
'seq_end' => '16239186',
'region_length' => '255871',
'region_type' => 'UCNEbase',
'el_id' => 'SOX5'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 13 => 'Adrenal',
(int) 25 => 'Bladder',
(int) 41 => 'Brain',
(int) 58 => 'Breast',
(int) 77 => 'Colon',
(int) 86 => 'Heart',
(int) 97 => 'Kidney',
(int) 110 => 'Liver',
(int) 127 => 'Lung',
(int) 144 => 'Muscle',
(int) 157 => 'Ovary',
(int) 186 => 'Placenta',
(int) 207 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 70
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENST00000538297' => array(
'start' => '23181334',
'end' => '23251499',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-153K16.2-001'
),
'ENST00000367206' => array(
'start' => '23536530',
'end' => '23950920',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'SOX5-006'
),
'ENST00000381381' => array(
'start' => '23532298',
'end' => '23949703',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SOX5-201'
),
'ENST00000396007' => array(
'start' => '23534034',
'end' => '23584612',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SOX5-001'
),
'ENST00000441133' => array(
'start' => '23762475',
'end' => '23951020',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SOX5-004'
),
'ENST00000451604' => array(
'start' => '23532352',
'end' => '23949703',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SOX5-002'
),
'ENST00000535530' => array(
'start' => '23563316',
'end' => '23738506',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SOX5-014'
),
'ENST00000536629' => array(
'start' => '23575813',
'end' => '23738506',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SOX5-015'
),
'ENST00000536850' => array(
'start' => '23920038',
'end' => '23949592',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SOX5-011'
),
'ENST00000536911' => array(
'start' => '23603921',
'end' => '23734715',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'SOX5-013'
),
'ENST00000537393' => array(
'start' => '23533683',
'end' => '23949647',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SOX5-008'
),
'ENST00000538083' => array(
'start' => '23845991',
'end' => '23944352',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SOX5-010'
),
'ENST00000541536' => array(
'start' => '23533787',
'end' => '23896027',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SOX5-009'
),
'ENST00000541847' => array(
'start' => '23740851',
'end' => '23950907',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SOX5-016'
),
'ENST00000542241' => array(
'start' => '23575659',
'end' => '23632194',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SOX5-012'
),
'ENST00000545921' => array(
'start' => '23534048',
'end' => '23951032',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SOX5-007'
),
'ENST00000546136' => array(
'start' => '23529500',
'end' => '23896026',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SOX5-003'
),
'ENST00000401373' => array(
'start' => '24212421',
'end' => '24212495',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'MIR920-201'
),
'ENST00000429944' => array(
'start' => '24277250',
'end' => '24562493',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-444D3.1-003'
),
'ENST00000446891' => array(
'start' => '24213342',
'end' => '24562487',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-444D3.1-006'
),
'ENST00000456299' => array(
'start' => '24331286',
'end' => '24562544',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-444D3.1-002'
),
'ENST00000536729' => array(
'start' => '24213343',
'end' => '24357430',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-444D3.1-005'
),
'ENST00000538905' => array(
'start' => '24367935',
'end' => '24562382',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-444D3.1-004'
),
'ENST00000540811' => array(
'start' => '24213256',
'end' => '24562590',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-444D3.1-001'
),
'ENST00000539583' => array(
'start' => '24223287',
'end' => '24237965',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-778H2.1-002'
),
'ENST00000540733' => array(
'start' => '24223271',
'end' => '24227508',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-778H2.1-001'
),
'ENST00000534841' => array(
'start' => '23175642',
'end' => '23188519',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-153K16.1-003'
),
'ENST00000541288' => array(
'start' => '23099368',
'end' => '23188538',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-153K16.1-001'
),
'ENST00000545400' => array(
'start' => '23175648',
'end' => '23191587',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-153K16.1-002'
),
'ENST00000541161' => array(
'start' => '23108458',
'end' => '23108493',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-686N4.1-001'
),
'ENST00000546118' => array(
'start' => '23637973',
'end' => '23638487',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-437F6.1-001'
),
'ENST00000413794' => array(
'start' => '22699859',
'end' => '22888043',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-114G22.1-001'
),
'ENST00000536744' => array(
'start' => '22699941',
'end' => '22888933',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-114G22.1-002'
),
'ENST00000538317' => array(
'start' => '22859475',
'end' => '22971008',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-114G22.1-003'
),
'ENST00000540895' => array(
'start' => '22964572',
'end' => '23174123',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-114G22.1-004'
),
'ENST00000540994' => array(
'start' => '23021787',
'end' => '23054241',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-114G22.1-005'
),
'ENST00000590328' => array(
'start' => '22787043',
'end' => '22888021',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-114G22.1-006'
),
'ENST00000590955' => array(
'start' => '22859165',
'end' => '22888021',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-114G22.1-008'
),
'ENST00000593117' => array(
'start' => '22859531',
'end' => '22888021',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-114G22.1-007'
),
'ENSMUST00000038815' => array(
'start' => '143828425',
'end' => '144209480',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Sox5-001'
),
'ENSMUST00000077160' => array(
'start' => '143828425',
'end' => '144209452',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Sox5-002'
),
'ENSMUST00000111746' => array(
'start' => '143839443',
'end' => '143947101',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Sox5-004'
),
'ENSMUST00000111748' => array(
'start' => '143828425',
'end' => '143947106',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Sox5-003'
),
'ENSMUST00000111749' => array(
'start' => '143828425',
'end' => '144209558',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Sox5-005'
),
'ENSMUST00000124233' => array(
'start' => '143841275',
'end' => '143947088',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Sox5-010'
),
'ENSMUST00000129050' => array(
'start' => '143906572',
'end' => '144204427',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Sox5-007'
),
'ENSMUST00000139478' => array(
'start' => '144116478',
'end' => '144204057',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Sox5-012'
),
'ENSMUST00000141102' => array(
'start' => '143843739',
'end' => '144781977',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Sox5-009'
),
'ENSMUST00000142294' => array(
'start' => '144021142',
'end' => '144209480',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Sox5-006'
),
'ENSMUST00000144289' => array(
'start' => '143844815',
'end' => '143947097',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Sox5-013'
),
'ENSMUST00000149451' => array(
'start' => '144104452',
'end' => '144781919',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Sox5-008'
),
'ENSMUST00000150087' => array(
'start' => '144154829',
'end' => '144209568',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Sox5-011'
),
'ENSMUST00000170367' => array(
'start' => '143828425',
'end' => '144209568',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Sox5-201'
),
'ENSMUST00000144026' => array(
'start' => '144670427',
'end' => '144672720',
'transcript_biotype' => 'sense_intronic',
'transcript_name' => 'Sox5it-001'
),
'ENSMUST00000100817' => array(
'start' => '143245893',
'end' => '143297272',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'D6Ertd474e-001'
),
'ENSMUST00000159793' => array(
'start' => '143245888',
'end' => '143249112',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'D6Ertd474e-005'
),
'ENSMUST00000160188' => array(
'start' => '143245888',
'end' => '143295708',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'D6Ertd474e-004'
),
'ENSMUST00000160951' => array(
'start' => '143286050',
'end' => '143296037',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'D6Ertd474e-002'
),
'ENSMUST00000161174' => array(
'start' => '143245893',
'end' => '143296073',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'D6Ertd474e-003'
),
'ENSMUST00000104053' => array(
'start' => '143465269',
'end' => '143465397',
'transcript_biotype' => 'snoRNA',
'transcript_name' => 'Gm23272-201'
),
'ENSMUST00000132321' => array(
'start' => '143533965',
'end' => '143535508',
'transcript_biotype' => 'lincRNA',
'transcript_name' => '4930579D09Rik-001'
),
'ENSMUST00000139351' => array(
'start' => '144672868',
'end' => '144693834',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Sox5os3-001'
),
'ENSMUST00000154167' => array(
'start' => '144679702',
'end' => '144693584',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Sox5os3-002'
),
'ENSMUST00000155562' => array(
'start' => '144720911',
'end' => '144759883',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Sox5os4-001'
),
'ENSMUST00000152192' => array(
'start' => '144723565',
'end' => '144724907',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Sox5os5-001'
),
'ENSMUST00000150559' => array(
'start' => '143593353',
'end' => '143651288',
'transcript_biotype' => 'lincRNA',
'transcript_name' => '1700060C16Rik-001'
),
'ENSMUST00000156443' => array(
'start' => '144481225',
'end' => '144501416',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Sox5os2-001'
),
'ENSMUST00000156994' => array(
'start' => '144021908',
'end' => '144023778',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Sox5os1-001'
),
'ENSDART00000006737' => array(
'start' => '16053213',
'end' => '16124134',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'sox5-201'
),
'ENSDART00000134595' => array(
'start' => '16050433',
'end' => '16123966',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'sox5-001'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_0007NR_0001' => array(
'genes_in_region' => array(
'ENSG00000115934' => array(
[maximum depth reached]
),
'ENSG00000134532' => array(
[maximum depth reached]
),
'ENSG00000255864' => array(
[maximum depth reached]
),
'ENSG00000256120' => array(
[maximum depth reached]
),
'ENSG00000256321' => array(
[maximum depth reached]
),
'ENSG00000256473' => array(
[maximum depth reached]
),
'ENSG00000256995' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Brain',
(int) 3 => 'Breast',
(int) 4 => 'Colon',
(int) 5 => 'Lung',
(int) 6 => 'Ovary',
(int) 7 => 'Testis',
(int) 8 => 'Bladder',
(int) 9 => 'Breast',
(int) 10 => 'Lung',
(int) 11 => 'Testis',
(int) 12 => 'Bladder',
(int) 13 => 'Kidney',
(int) 14 => 'Ovary',
(int) 15 => 'Lung',
(int) 16 => 'Ovary',
(int) 17 => 'Placenta',
(int) 18 => 'Heart',
(int) 19 => 'Ovary',
(int) 20 => 'Brain',
(int) 21 => 'Breast',
(int) 22 => 'Liver',
(int) 23 => 'Muscle',
(int) 24 => 'Placenta',
(int) 25 => 'Adrenal',
(int) 26 => 'Testis',
(int) 27 => 'Muscle',
(int) 28 => 'Ovary',
(int) 29 => 'Adrenal',
(int) 30 => 'Bladder',
(int) 31 => 'Brain',
(int) 32 => 'Breast',
(int) 33 => 'Colon',
(int) 34 => 'Heart',
(int) 35 => 'Kidney',
(int) 36 => 'Liver',
(int) 37 => 'Lung',
(int) 38 => 'Muscle',
(int) 39 => 'Ovary',
(int) 40 => 'Placenta',
(int) 41 => 'Testis',
(int) 42 => 'Muscle',
(int) 43 => 'Placenta',
(int) 44 => 'Adipose',
(int) 45 => 'Adrenal',
(int) 46 => 'Brain',
(int) 47 => 'Breast',
(int) 48 => 'Colon',
(int) 49 => 'Heart',
(int) 50 => 'Liver',
(int) 51 => 'Lung',
(int) 52 => 'Muscle',
(int) 53 => 'Ovary',
(int) 54 => 'Placenta',
(int) 55 => 'Testis',
(int) 56 => 'Liver',
(int) 57 => 'Testis',
(int) 58 => 'Adipose',
(int) 59 => 'Bladder',
(int) 60 => 'Brain',
(int) 61 => 'Breast',
(int) 62 => 'Colon',
(int) 63 => 'Kidney',
(int) 64 => 'Liver',
(int) 65 => 'Ovary',
(int) 66 => 'Adipose',
(int) 67 => 'Bladder',
(int) 68 => 'Brain',
(int) 69 => 'Ovary',
(int) 70 => 'Placenta',
(int) 71 => 'Testis',
(int) 72 => 'Adrenal',
(int) 73 => 'Bladder',
(int) 74 => 'Brain',
(int) 75 => 'Breast',
(int) 76 => 'Heart',
(int) 77 => 'Kidney',
(int) 78 => 'Liver',
(int) 79 => 'Lung',
(int) 80 => 'Ovary',
(int) 81 => 'Placenta',
(int) 82 => 'Adrenal',
(int) 83 => 'Breast',
(int) 84 => 'Ovary',
(int) 85 => 'Testis',
(int) 86 => 'Adipose',
(int) 87 => 'Colon',
(int) 88 => 'Testis',
(int) 89 => 'Testis',
(int) 90 => 'Testis',
(int) 91 => 'Brain',
(int) 92 => 'Ovary',
(int) 93 => 'Testis',
(int) 94 => 'Adipose',
(int) 95 => 'Brain',
(int) 96 => 'Colon',
(int) 97 => 'Ovary',
(int) 98 => 'Testis',
(int) 99 => 'Brain',
(int) 100 => 'Breast',
(int) 101 => 'Heart',
(int) 102 => 'Lung',
(int) 103 => 'Ovary',
(int) 104 => 'Testis',
(int) 105 => 'Adipose',
(int) 106 => 'Brain',
(int) 107 => 'Lung',
(int) 108 => 'Ovary',
(int) 109 => 'Testis',
(int) 110 => 'Adipose',
(int) 111 => 'Placenta',
(int) 112 => 'Testis',
(int) 113 => 'Lung'
)
),
'CIL_0007NR_0002' => array(
'genes_in_region' => array(
'ENSMUSG00000041540' => array(
[maximum depth reached]
),
'ENSMUSG00000072677' => array(
[maximum depth reached]
),
'ENSMUSG00000072679' => array(
[maximum depth reached]
),
'ENSMUSG00000084971' => array(
[maximum depth reached]
),
'ENSMUSG00000085785' => array(
[maximum depth reached]
),
'ENSMUSG00000086282' => array(
[maximum depth reached]
),
'ENSMUSG00000086731' => array(
[maximum depth reached]
),
'ENSMUSG00000086887' => array(
[maximum depth reached]
),
'ENSMUSG00000087157' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Bladder',
(int) 1 => 'Brain',
(int) 2 => 'Breast',
(int) 3 => 'Liver',
(int) 4 => 'Placenta',
(int) 5 => 'Brain',
(int) 6 => 'Breast',
(int) 7 => 'Heart',
(int) 8 => 'Ovary',
(int) 9 => 'Placenta',
(int) 10 => 'Adrenal',
(int) 11 => 'Breast',
(int) 12 => 'Colon',
(int) 13 => 'Kidney',
(int) 14 => 'Lung',
(int) 15 => 'Muscle',
(int) 16 => 'Ovary',
(int) 17 => 'Placenta',
(int) 18 => 'Testis',
(int) 19 => 'Adrenal',
(int) 20 => 'Bladder',
(int) 21 => 'Brain',
(int) 22 => 'Colon',
(int) 23 => 'Heart',
(int) 24 => 'Kidney',
(int) 25 => 'Liver',
(int) 26 => 'Muscle',
(int) 27 => 'Placenta',
(int) 28 => 'Brain',
(int) 29 => 'Muscle',
(int) 30 => 'Ovary',
(int) 31 => 'Placenta',
(int) 32 => 'Testis',
(int) 33 => 'Muscle',
(int) 34 => 'Bladder',
(int) 35 => 'Breast',
(int) 36 => 'Kidney',
(int) 37 => 'Liver',
(int) 38 => 'Lung',
(int) 39 => 'Muscle',
(int) 40 => 'Ovary',
(int) 41 => 'Placenta',
(int) 42 => 'Adrenal',
(int) 43 => 'Testis',
(int) 44 => 'Bladder',
(int) 45 => 'Brain',
(int) 46 => 'Breast',
(int) 47 => 'Liver',
(int) 48 => 'Lung',
(int) 49 => 'Ovary',
(int) 50 => 'Placenta',
(int) 51 => 'Testis',
(int) 52 => 'Adipose',
(int) 53 => 'Bladder',
(int) 54 => 'Brain',
(int) 55 => 'Breast',
(int) 56 => 'Colon',
(int) 57 => 'Heart',
(int) 58 => 'Kidney',
(int) 59 => 'Liver',
(int) 60 => 'Lung',
(int) 61 => 'Muscle',
(int) 62 => 'Ovary',
(int) 63 => 'Placenta',
(int) 64 => 'Ovary',
(int) 65 => 'Placenta',
(int) 66 => 'Ovary',
(int) 67 => 'Placenta',
(int) 68 => 'Adipose',
(int) 69 => 'Liver',
(int) 70 => 'Muscle',
(int) 71 => 'Ovary',
(int) 72 => 'Placenta',
(int) 73 => 'Bladder',
(int) 74 => 'Ovary',
(int) 75 => 'Lung',
(int) 76 => 'Testis',
(int) 77 => 'Adipose',
(int) 78 => 'Adrenal',
(int) 79 => 'Bladder',
(int) 80 => 'Breast',
(int) 81 => 'Heart',
(int) 82 => 'Kidney',
(int) 83 => 'Liver',
(int) 84 => 'Lung',
(int) 85 => 'Ovary',
(int) 86 => 'Testis',
(int) 87 => 'Adrenal',
(int) 88 => 'Bladder',
(int) 89 => 'Breast',
(int) 90 => 'Kidney',
(int) 91 => 'Liver',
(int) 92 => 'Lung',
(int) 93 => 'Muscle',
(int) 94 => 'Ovary',
(int) 95 => 'Adrenal',
(int) 96 => 'Breast',
(int) 97 => 'Kidney',
(int) 98 => 'Liver',
(int) 99 => 'Ovary',
(int) 100 => 'Placenta',
(int) 101 => 'Testis',
(int) 102 => 'Bladder',
(int) 103 => 'Adipose',
(int) 104 => 'Breast',
(int) 105 => 'Kidney',
(int) 106 => 'Liver',
(int) 107 => 'Ovary',
(int) 108 => 'Placenta',
(int) 109 => 'Testis',
(int) 110 => 'Adipose',
(int) 111 => 'Bladder',
(int) 112 => 'Heart',
(int) 113 => 'Liver',
(int) 114 => 'Lung'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_0007NR_0003',
'tax_id' => '7955',
'chromosome' => '4',
'seq_start' => '15983315',
'seq_end' => '16239186',
'region_length' => '255871',
'region_type' => 'UCNEbase',
'el_id' => 'SOX5'
)
)
$gene_el = array(
'ENSMUST00000156443' => array(
'Adipose' => array(
'average_FPKM' => '0.120',
'stddev_FPKM' => '0.05'
),
'Bladder' => array(
'average_FPKM' => '0.015',
'stddev_FPKM' => '0.00'
),
'Heart' => array(
'average_FPKM' => '0.120',
'stddev_FPKM' => '0.00'
),
'Liver' => array(
'average_FPKM' => '0.018',
'stddev_FPKM' => '0.00'
),
'Lung' => array(
'average_FPKM' => '0.088',
'stddev_FPKM' => '0.01'
)
)
)
$gene_key = 'ENSMUSG00000087157'
$is_first = false
$tran_el = array(
'Adipose' => array(
'average_FPKM' => '0.120',
'stddev_FPKM' => '0.05'
),
'Bladder' => array(
'average_FPKM' => '0.015',
'stddev_FPKM' => '0.00'
),
'Heart' => array(
'average_FPKM' => '0.120',
'stddev_FPKM' => '0.00'
),
'Liver' => array(
'average_FPKM' => '0.018',
'stddev_FPKM' => '0.00'
),
'Lung' => array(
'average_FPKM' => '0.088',
'stddev_FPKM' => '0.01'
)
)
$tran_key = 'ENSMUST00000156443'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
(RP11-153K16.2)