C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
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| Description: | SRY (sex determining region Y)-box 5 | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENST00000381381  |
SOX5-201 |
ENSG00000134532 |
9606 | - |
12:23532298-23949703  |
protein_coding |
Expression PatternsNo expression data. |
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_0006Y0 | CIL_0006Y0_0002 | CGP | 12:22625075-23951032 |
| CIL_0007NR | CIL_0007NR_0001 | UCNEbase | 12:22767069-24538480 |
| CIL_0004XB | CIL_0004XB_0001 | CGP | 12:23529500-24949459 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| GO:0003700 | TAS | sequence-specific DNA binding transcription factor activity |
| GO:0005515 | IPI | protein binding |
| GO:0032332 | IDA | positive regulation of chondrocyte differentiation |
| GO:0061036 | IDA | positive regulation of cartilage development |
| GO:0071560 | IDA | cellular response to transforming growth factor beta stimulus |
| GO:2000741 | IDA | positive regulation of mesenchymal stem cell differentiation |
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENSMUST00000038815
|
Sox5-001 | protein_coding | Mus_musculus | 0 | 1740 |
|
ENSMUST00000170367
|
Sox5-201 | protein_coding | Mus_musculus | 0 | 1515 |
|
ENSMUST00000111749
|
Sox5-005 | protein_coding | Mus_musculus | 0 | 1511 |
|
ENSMUST00000077160
|
Sox5-002 | protein_coding | Mus_musculus | 0 | 1511 |
|
ENSMUST00000111748
|
Sox5-003 | protein_coding | Mus_musculus | 0 | 1511 |
|
ENSMUST00000141102
|
Sox5-009 | retained_intron | Mus_musculus | 0 | 1314 |
|
ENSMUST00000142294
|
Sox5-006 | retained_intron | Mus_musculus | 0 | 1234 |
|
ENSMUST00000129050
|
Sox5-007 | retained_intron | Mus_musculus | 0 | 1177 |
|
ENSMUST00000150087
|
Sox5-011 | retained_intron | Mus_musculus | 0 | 564 |
|
ENSMUST00000111746
|
Sox5-004 | processed_transcript | Mus_musculus | 0 | 418 |
|
ENSMUST00000144289
|
Sox5-013 | protein_coding | Mus_musculus | 0 | 363 |
|
ENSDART00000100998
|
sox6-201 | protein_coding | Danio_rerio | 0 | 270 |
|
ENSDART00000150068
|
sox6-001 | protein_coding | Danio_rerio | 0 | 270 |
|
ENSMUST00000149451
|
Sox5-008 | processed_transcript | Mus_musculus | 0 | 268 |
|
ENSMUST00000139478
|
Sox5-012 | processed_transcript | Mus_musculus | 0 | 233 |
|
ENSDART00000006737
|
sox5-201 | protein_coding | Danio_rerio | 2e-35 | 156 |
|
ENSDART00000134595
|
sox5-001 | protein_coding | Danio_rerio | 3e-33 | 148 |
|
ENSMUST00000124233
|
Sox5-010 | protein_coding | Mus_musculus | 7e-30 | 137 |
