C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA binding motif protein 39
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000130516 Rbm39-006 ENSMUSG00000027620 10090 - 2:156163986-156168148 retained_intron

Mus musculus EnsemblGRCm38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008EI CIL_0008EI_0002 VISTA 2:155562263-156164147
CIL_0000WY CIL_0000WY_0002 CGP 2:156144039-156180238
CIL_0000X2 CIL_0000X2_0002 CGP 2:156147239-156309952

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000253363 RBM39-002 protein_coding Homo_sapiens 0 355
ENST00000338163 RBM39-008 nonsense_mediated_decay Homo_sapiens 0 355
ENST00000361162 RBM39-001 protein_coding Homo_sapiens 0 355
ENST00000374038 RBM39-020 protein_coding Homo_sapiens 0 337
ENST00000397254 RP6-218J18.2-001 processed_pseudogene Homo_sapiens 0 320
ENST00000403542 RBM39-006 nonsense_mediated_decay Homo_sapiens 0 355
ENST00000412738 RBM39-017 nonsense_mediated_decay Homo_sapiens 0 355
ENST00000416108 RBM39-043 nonsense_mediated_decay Homo_sapiens 5e-19 99
ENST00000425184 RBM39-021 nonsense_mediated_decay Homo_sapiens 0 289
ENST00000429968 RBM39-005 nonsense_mediated_decay Homo_sapiens 0 355
ENST00000434927 RBM39-018 protein_coding Homo_sapiens 0 355
ENST00000444878 RBM39-007 nonsense_mediated_decay Homo_sapiens 0 355
ENST00000461283 RBM39-009 retained_intron Homo_sapiens 0 355
ENST00000463004 RBM39-004 retained_intron Homo_sapiens 0 355
ENST00000481037 RBM39-022 retained_intron Homo_sapiens 0 255
ENST00000492779 RBM39-010 retained_intron Homo_sapiens 0 355

Loading