C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA binding motif protein 39
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000492779 RBM39-010 ENSG00000131051 9606 - 20:35704328-35732806 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBreastColonHeartKidneyLiverENST00000492779
Transcript ID Bladder Breast Colon Heart Kidney Liver
ENST00000492779 3.795±0.00 15.598±0.00 8.108±0.00 3.794±0.00 7.526±0.00 9.630±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000WY CIL_0000WY_0001 CGP 20:35699272-35742312
CIL_0000X2 CIL_0000X2_0001 CGP 20:35703609-35950381

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000153514 Rbm39-025 nonsense_mediated_decay Mus_musculus 0 2401
ENSMUST00000155837 Rbm39-002 nonsense_mediated_decay Mus_musculus 0 2398
ENSMUST00000109587 Rbm39-001 protein_coding Mus_musculus 0 2398
ENSMUST00000029149 Rbm39-018 protein_coding Mus_musculus 0 2281
ENSMUST00000146297 Rbm39-003 protein_coding Mus_musculus 0 2281
ENSMUST00000142071 Rbm39-026 nonsense_mediated_decay Mus_musculus 0 1513
ENSMUST00000119414 Gm15575-001 processed_pseudogene Mus_musculus 0 1251
ENSMUST00000126992 Rbm39-020 protein_coding Mus_musculus 0 1000
ENSMUST00000182280 Gm8816-001 processed_pseudogene Mus_musculus 0 920
ENSMUST00000148794 Rbm39-019 protein_coding Mus_musculus 0 765
ENSMUST00000161037 Gm8837-001 processed_pseudogene Mus_musculus 0 693
ENSMUST00000135274 Rbm39-017 retained_intron Mus_musculus 0 590
ENSMUST00000131625 Rbm39-016 processed_transcript Mus_musculus 0 457
ENSMUST00000138381 Rbm39-015 retained_intron Mus_musculus 0 427
ENSMUST00000130516 Rbm39-006 retained_intron Mus_musculus 0 355
ENSMUST00000150272 Rbm39-011 processed_transcript Mus_musculus 0 202

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