C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transformation related protein 53 binding protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000131245 Trp53bp1-003 ENSMUSG00000043909 10090 - 2:121216143-121271321 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainOvaryPlacentaTestisENSMUST00000131245
Transcript ID Brain Ovary Placenta Testis
ENSMUST00000131245 30.297±0.00 11.957±0.00 11.032±0.00 29.045±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005YH CIL_0005YH_0002 CGP 2:121158273-121198770
CIL_0005YA CIL_0005YA_0002 CGP 2:121170654-121271407
CIL_0005YB CIL_0005YB_0002 CGP 2:121193281-121310832

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000776 IDA kinetochore
GO:0003684 IDA damaged DNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005657 IDA replication fork
GO:0006281 IDA DNA repair
GO:0006355 TAS regulation of transcription, DNA-templated
GO:0006974 ISO cellular response to DNA damage stimulus
GO:0008134 TAS transcription factor binding
GO:0042162 IDA telomeric DNA binding
GO:0043565 IDA sequence-specific DNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000263801 TP53BP1-002 protein_coding Homo_sapiens 0 2109
ENST00000382039 TP53BP1-004 protein_coding Homo_sapiens 0 2167
ENST00000382044 TP53BP1-001 protein_coding Homo_sapiens 0 2167
ENST00000411772 TP53BP1-011 nonsense_mediated_decay Homo_sapiens 0 396
ENST00000413546 TP53BP1-005 protein_coding Homo_sapiens 0 2560
ENST00000450115 TP53BP1-014 protein_coding Homo_sapiens 0 2167
ENST00000572085 TP53BP1-015 retained_intron Homo_sapiens 0 2167
ENST00000605155 TP53BP1-018 processed_transcript Homo_sapiens 2e-17 94

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