C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: tumor protein p53 binding protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000382039 TP53BP1-004 ENSG00000067369 9606 - 15:43407214-43493105 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; HeartKidneyENST00000382039
Transcript ID Heart Kidney
ENST00000382039 1.351±0.00 0.717±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005YH CIL_0005YH_0001 CGP 15:43358172-43409771
CIL_0005YA CIL_0005YA_0001 CGP 15:43369221-43510728
CIL_0005YB CIL_0005YB_0001 CGP 15:43403061-43531620

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 IDA nucleus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000110647 Trp53bp1-002 protein_coding Mus_musculus 0 3166
ENSMUST00000110648 Trp53bp1-001 protein_coding Mus_musculus 0 2815
ENSMUST00000147540 Trp53bp1-007 nonsense_mediated_decay Mus_musculus 0 2440
ENSMUST00000131245 Trp53bp1-003 protein_coding Mus_musculus 0 2167
ENSMUST00000135890 Trp53bp1-006 processed_transcript Mus_musculus 0 1875
ENSMUST00000147554 Trp53bp1-016 processed_transcript Mus_musculus 0 953
ENSMUST00000136617 Trp53bp1-004 processed_transcript Mus_musculus 0 628
ENSMUST00000154426 Trp53bp1-018 nonsense_mediated_decay Mus_musculus 0 614
ENSMUST00000186659 Tubgcp4-201 protein_coding Mus_musculus 0 569
ENSMUST00000144076 Tubgcp4-004 retained_intron Mus_musculus 0 569
ENSMUST00000138601 Tubgcp4-003 retained_intron Mus_musculus 0 569
ENSMUST00000110658 Tubgcp4-002 protein_coding Mus_musculus 0 569
ENSMUST00000039541 Tubgcp4-001 protein_coding Mus_musculus 0 569
ENSMUST00000132812 Trp53bp1-015 processed_transcript Mus_musculus 0 503
ENSMUST00000129752 Trp53bp1-010 nonsense_mediated_decay Mus_musculus 0 488
ENSMUST00000140285 Trp53bp1-005 retained_intron Mus_musculus 0 486
ENSMUST00000124060 Trp53bp1-008 retained_intron Mus_musculus 0 331
ENSMUST00000142400 Trp53bp1-017 protein_coding Mus_musculus 0 263
ENSMUST00000131426 Trp53bp1-009 retained_intron Mus_musculus 1.99965e-42 180

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