C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tumor protein p53 binding protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000411772 TP53BP1-011 ENSG00000067369 9606 - 15:43407214-43456331 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonKidneyLungOvaryPlacentaTestisENST00000411772
Transcript ID Colon Kidney Lung Ovary Placenta Testis
ENST00000411772 3.136±0.00 4.948±0.00 3.514±0.00 5.533±0.98 2.604±0.84 8.633±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005YH CIL_0005YH_0001 CGP 15:43358172-43409771
CIL_0005YA CIL_0005YA_0001 CGP 15:43369221-43510728
CIL_0005YB CIL_0005YB_0001 CGP 15:43403061-43531620

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000147540 Trp53bp1-007 nonsense_mediated_decay Mus_musculus 0 3404
ENSMUST00000110648 Trp53bp1-001 protein_coding Mus_musculus 0 3404
ENSMUST00000135890 Trp53bp1-006 processed_transcript Mus_musculus 0 2615
ENSMUST00000110647 Trp53bp1-002 protein_coding Mus_musculus 0 2440
ENSMUST00000147554 Trp53bp1-016 processed_transcript Mus_musculus 0 953
ENSMUST00000132812 Trp53bp1-015 processed_transcript Mus_musculus 0 741
ENSMUST00000124554 Trp53bp1-019 nonsense_mediated_decay Mus_musculus 0 638
ENSMUST00000154426 Trp53bp1-018 nonsense_mediated_decay Mus_musculus 0 614
ENSMUST00000186659 Tubgcp4-201 protein_coding Mus_musculus 0 569
ENSMUST00000144076 Tubgcp4-004 retained_intron Mus_musculus 0 569
ENSMUST00000138601 Tubgcp4-003 retained_intron Mus_musculus 0 569
ENSMUST00000110658 Tubgcp4-002 protein_coding Mus_musculus 0 569
ENSMUST00000039541 Tubgcp4-001 protein_coding Mus_musculus 0 569
ENSMUST00000131245 Trp53bp1-003 protein_coding Mus_musculus 0 396
ENSMUST00000142400 Trp53bp1-017 protein_coding Mus_musculus 0 259

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