C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: histone deacetylase 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000133651 Hdac5-010 ENSMUSG00000008855 10090 - 11:102199390-102200816 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; PlacentaENSMUST00000133651
Transcript ID Placenta
ENSMUST00000133651 4.875±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B6 CIL_0009B6_0002 VISTA 11:102063033-102664797
CIL_0005J5 CIL_0005J5_0002 CGP 11:102189620-102230166
CIL_0005J4 CIL_0005J4_0002 CGP 11:102194432-102265187

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000080059 HDAC7-001 protein_coding Homo_sapiens 1e-37 163
ENST00000225983 HDAC5-003 protein_coding Homo_sapiens 0 525
ENST00000354334 HDAC7-002 protein_coding Homo_sapiens 1e-37 163
ENST00000380610 HDAC7-029 protein_coding Homo_sapiens 9e-38 163
ENST00000427332 HDAC7-013 protein_coding Homo_sapiens 9e-38 163
ENST00000459625 HDAC7-007 retained_intron Homo_sapiens 4e-29 135
ENST00000470668 HDAC7-005 retained_intron Homo_sapiens 1e-37 163
ENST00000477203 HDAC7-030 nonsense_mediated_decay Homo_sapiens 9e-38 163
ENST00000477937 HDAC7-026 processed_transcript Homo_sapiens 3e-29 132
ENST00000488927 HDAC7-027 nonsense_mediated_decay Homo_sapiens 2e-38 163
ENST00000548080 HDAC7-031 protein_coding Homo_sapiens 4e-38 163
ENST00000548938 HDAC7-003 nonsense_mediated_decay Homo_sapiens 8e-38 163
ENST00000552960 HDAC7-028 protein_coding Homo_sapiens 9e-38 163
ENST00000586802 HDAC5-002 protein_coding Homo_sapiens 0 525
ENST00000588419 HDAC5-012 retained_intron Homo_sapiens 0 525
ENST00000592385 HDAC5-004 retained_intron Homo_sapiens 0 525
ENST00000593013 HDAC5-005 retained_intron Homo_sapiens 0 551

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