| Transcript ID | Colon |
|---|---|
| ENST00000455624 | 0.041±0.00 |
C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
||||||
| Description: | sodium channel, voltage-gated, type V, alpha subunit | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENST00000455624  |
SCN5A-002 |
ENSG00000183873 |
9606 | - |
3:38549128-38633332  |
protein_coding |
Expression Patterns
|
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_0008BE | CIL_0008BE_0001 | VISTA | 3:38261144-38866061 |
| CIL_0005VU | CIL_0005VU_0001 | CGP | 3:38496127-38649673 |
| CIL_0004RF | CIL_0004RF_0001 | CGP | 3:38548057-38794010 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| GO:0001518 | IEA | voltage-gated sodium channel complex |
| GO:0005216 | IEA | ion channel activity |
| GO:0005248 | IEA | voltage-gated sodium channel activity |
| GO:0006811 | IEA | ion transport |
| GO:0006814 | IEA | sodium ion transport |
| GO:0016020 | IEA | membrane |
| GO:0034765 | IEA | regulation of ion transmembrane transport |
| GO:0035725 | IEA | sodium ion transmembrane transport |
| GO:0055085 | IEA | transmembrane transport |
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENSMUST00000117911
|
Scn5a-001 | protein_coding | Mus_musculus | 0 | 5930 |
|
ENSMUST00000120420
|
Scn5a-002 | protein_coding | Mus_musculus | 0 | 5794 |
|
ENSMUST00000065196
|
Scn5a-201 | protein_coding | Mus_musculus | 0 | 5786 |
|
ENSMUST00000084787
|
Scn10a-201 | protein_coding | Mus_musculus | 0 | 809 |
|
ENSMUST00000021056
|
Scn4a-001 | protein_coding | Mus_musculus | 0 | 771 |
|
ENSMUST00000100067
|
Scn2a1-201 | protein_coding | Mus_musculus | 0 | 564 |
|
ENSMUST00000028377
|
Scn2a1-001 | protein_coding | Mus_musculus | 0 | 564 |
|
ENSMUST00000066432
|
Scn3a-201 | protein_coding | Mus_musculus | 0 | 564 |
|
ENSMUST00000100069
|
Scn3a-001 | protein_coding | Mus_musculus | 0 | 564 |
|
ENSMUST00000169900
|
Scn9a-203 | protein_coding | Mus_musculus | 0 | 531 |
|
ENSMUST00000100063
|
Scn9a-201 | protein_coding | Mus_musculus | 0 | 531 |
|
ENSMUST00000164384
|
Scn9a-202 | protein_coding | Mus_musculus | 0 | 531 |
|
ENSMUST00000112354
|
Scn9a-002 | protein_coding | Mus_musculus | 0 | 531 |
|
ENSMUST00000100064
|
Scn9a-001 | protein_coding | Mus_musculus | 0 | 531 |
|
ENSMUST00000112371
|
Scn1a-201 | protein_coding | Mus_musculus | 0 | 483 |
|
ENSMUST00000094951
|
Scn1a-005 | protein_coding | Mus_musculus | 0 | 483 |
|
ENSMUST00000077489
|
Scn1a-004 | protein_coding | Mus_musculus | 0 | 483 |
|
ENSMUST00000156865
|
Scn1a-003 | processed_transcript | Mus_musculus | 0 | 483 |
|
ENSMUST00000112366
|
Scn1a-001 | protein_coding | Mus_musculus | 0 | 483 |
|
ENSDART00000106534
|
scn4aa-001 | protein_coding | Danio_rerio | 0 | 407 |
|
ENSDART00000022761
|
scn8ab-201 | protein_coding | Danio_rerio | 0 | 399 |
|
ENSDART00000151299
|
scn8ab-001 | protein_coding | Danio_rerio | 0 | 399 |
|
ENSMUST00000126837
|
Scn3a-002 | protein_coding | Mus_musculus | 0 | 318 |
|
ENSDART00000011718
|
scn1a-201 | protein_coding | Danio_rerio | 0 | 265 |
|
ENSDART00000090979
|
scn1a-202 | protein_coding | Danio_rerio | 0 | 265 |
|
ENSMUST00000144254
|
Scn2a1-002 | protein_coding | Mus_musculus | 0 | 217 |
|
ENSMUST00000138368
|
Scn2a1-003 | processed_transcript | Mus_musculus | 4.06377e-44 | 185 |
|
ENSMUST00000138934
|
Scn5a-003 | protein_coding | Mus_musculus | 4e-39 | 169 |
