C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: transient receptor potential cation channel, subfamily M, member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000141574 Trpm1-006 ENSMUSG00000030523 10090 + 7:64185381-64211427 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonLiverMuscleENSMUST00000141574
Transcript ID Adrenal Breast Colon Liver Muscle
ENSMUST00000141574 0.036±0.00 0.061±0.01 0.070±0.00 0.042±0.03 0.036±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00081G CIL_00081G_0002 VISTA 7:63656077-64260826

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000256552 TRPM1-004 protein_coding Homo_sapiens 0 1415
ENST00000397795 TRPM1-001 protein_coding Homo_sapiens 0 1428
ENST00000542188 TRPM1-201 protein_coding Homo_sapiens 0 1417
ENST00000558070 TRPM1-009 retained_intron Homo_sapiens 0 387
ENST00000558445 TRPM1-008 protein_coding Homo_sapiens 0 1417
ENST00000558768 TRPM1-007 protein_coding Homo_sapiens 0 1070
ENST00000560658 TRPM1-005 nonsense_mediated_decay Homo_sapiens 0 1070
ENST00000560801 TRPM1-006 nonsense_mediated_decay Homo_sapiens 0 797
ENST00000611448 TRPM1-202 protein_coding Homo_sapiens 0 1423
ENST00000615583 TRPM1-203 protein_coding Homo_sapiens 0 1421
ENST00000617515 TRPM1-204 protein_coding Homo_sapiens 0 1448
ENST00000618210 TRPM1-205 protein_coding Homo_sapiens 0 1330
ENST00000621076 TRPM1-206 protein_coding Homo_sapiens 0 797

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