C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: myosin, heavy polypeptide 6, cardiac muscle, alpha
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000145322 Myh6-001 ENSMUSG00000040752 10090 - 14:54952246-54966641 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeColonKidneyLiverLungOvaryENSMUST00000145322
Transcript ID Adipose Colon Kidney Liver Lung Ovary
ENSMUST00000145322 0.015±0.01 0.013±0.00 0.063±0.00 0.024±0.01 8.251±1.76 0.115±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00090C CIL_00090C_0002 VISTA 14:54638004-55241428
CIL_0009BW CIL_0009BW_0002 VISTA 14:54696106-55297707
CIL_0008Q4 CIL_0008Q4_0002 VISTA 14:54696894-55297224
CIL_0008QH CIL_0008QH_0002 VISTA 14:54703667-55304830
CIL_00051L CIL_00051L_0002 CGP 14:54936470-54966927
CIL_0004Z7 CIL_0004Z7_0008 CGP 14:54941921-54994634

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000146 IMP microfilament motor activity
GO:0001701 IMP in utero embryonic development
GO:0001725 IDA stress fiber
GO:0002026 IMP regulation of the force of heart contraction
GO:0002027 IMP regulation of heart rate
GO:0003779 IEA actin binding
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0006941 IMP striated muscle contraction
GO:0007512 IMP adult heart development
GO:0007522 IMP visceral muscle development
GO:0008016 IMP regulation of heart contraction
GO:0008217 IMP regulation of blood pressure
GO:0016459 IDA myosin complex
GO:0030016 IDA myofibril
GO:0030018 IDA Z disc
GO:0030048 IMP actin filament-based movement
GO:0030239 IMP myofibril assembly
GO:0030509 IDA BMP signaling pathway
GO:0043462 IMP regulation of ATPase activity
GO:0045214 IMP sarcomere organization
GO:0048739 IMP cardiac muscle fiber development
GO:0051015 IEA actin filament binding
GO:0060070 IDA canonical Wnt signaling pathway
GO:0060420 IDA regulation of heart growth

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000150162 si:ch211-24n20.3-001 protein_coding Danio_rerio 0 2322
ENSDART00000137082 CU633479.6-201 protein_coding Danio_rerio 0 2281
ENSDART00000135233 si:ch211-24n20.3-201 protein_coding Danio_rerio 0 2276
ENSDART00000066527 smyhc3-201 protein_coding Danio_rerio 0 2250
ENSDART00000150060 smyhc3-001 protein_coding Danio_rerio 0 2250
ENSDART00000056849 smyhc2-001 protein_coding Danio_rerio 0 2218
ENSDART00000133338 CR450736.2-201 protein_coding Danio_rerio 0 2193
ENSDART00000137989 CU633479.5-201 protein_coding Danio_rerio 0 2178
ENSDART00000056853 smyhc1-203 protein_coding Danio_rerio 0 2108
ENSDART00000045928 smyhc1-202 protein_coding Danio_rerio 0 1740
ENSDART00000004536 smyhc1-201 protein_coding Danio_rerio 0 1725
ENSDART00000051360 MYH13 (3 of 10)-201 protein_coding Danio_rerio 0 1589
ENSDART00000123920 MYH13 (5 of 10)-202 protein_coding Danio_rerio 0 1543
ENSDART00000135295 MYH13 (9 of 10)-201 protein_coding Danio_rerio 0 1153
ENSDART00000075210 protein_coding Danio_rerio 0 1110
ENSDART00000130036 MYH13 (5 of 10)-201 protein_coding Danio_rerio 0 761
ENSDART00000124862 smyhc2-003 protein_coding Danio_rerio 0 484
ENSDART00000149247 smyhc2-004 retained_intron Danio_rerio 0 259
ENSDART00000147211 smyhc2-002 retained_intron Danio_rerio 1.00053e-42 180
ENST00000226207 MYH1-001 protein_coding Homo_sapiens 0 2008
ENST00000245503 MYH2-001 protein_coding Homo_sapiens 0 1882
ENST00000252172 MYH13-001 protein_coding Homo_sapiens 0 1866
ENST00000255381 MYH4-001 protein_coding Homo_sapiens 0 1897
ENST00000262873 MYH7B-001 protein_coding Homo_sapiens 0 1328
ENST00000355349 MYH7-001 protein_coding Homo_sapiens 0 3731
ENST00000356287 MYH6-001 protein_coding Homo_sapiens 0 4682
ENST00000376970 MYH14-202 protein_coding Homo_sapiens 0 193
ENST00000397183 MYH2-201 protein_coding Homo_sapiens 0 1882
ENST00000405093 MYH6-201 protein_coding Homo_sapiens 0 4687
ENST00000413734 MYH16-003 processed_transcript Homo_sapiens 0 392
ENST00000418404 MYH13-003 protein_coding Homo_sapiens 0 1866
ENST00000420805 MYH2-002 protein_coding Homo_sapiens 0 316
ENST00000425460 MYH14-203 protein_coding Homo_sapiens 0 193
ENST00000439784 MYH16-001 unitary_pseudogene Homo_sapiens 0 704
ENST00000440075 MYH14-204 protein_coding Homo_sapiens 2e-35 156
ENST00000470929 MYH7B-002 retained_intron Homo_sapiens 3e-25 121
ENST00000532183 MYH2-006 protein_coding Homo_sapiens 0 1177
ENST00000557461 MYH6-002 retained_intron Homo_sapiens 0 2265
ENST00000578017 MYH2-009 protein_coding Homo_sapiens 0 392
ENST00000579489 MYH3-004 retained_intron Homo_sapiens 0 289
ENST00000583535 MYH3-001 protein_coding Homo_sapiens 0 1897
ENST00000596571 MYH14-008 protein_coding Homo_sapiens 0 193
ENST00000598205 MYH14-006 protein_coding Homo_sapiens 0 193
ENST00000599920 MYH14-007 protein_coding Homo_sapiens 0 193
ENST00000601313 MYH14-001 protein_coding Homo_sapiens 0 193
ENST00000618182 MYH7B-201 protein_coding Homo_sapiens 0 1328
ENST00000621918 MYH13-201 protein_coding Homo_sapiens 0 1866
ENST00000622564 MYH2-202 protein_coding Homo_sapiens 0 1177

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