C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: slow myosin heavy chain 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000056849 smyhc2-001 ENSDARG00000071433 7955 - 24:42264601-42285123 protein_coding

Danio rerio EnsemblZv9

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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000056849
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000056849 0.107±0.10 0.009±0.00 0.895±0.00 0.006±0.00 21.270±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004Z7 CIL_0004Z7_0002 CGP 24:42241037-42285123
CIL_0004Z7 CIL_0004Z7_0003 CGP 24:42264601-42310039

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003774 IEA motor activity
GO:0003779 IEA actin binding
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding
GO:0016020 IEA membrane
GO:0016192 IEA vesicle-mediated transport
GO:0016459 IEA myosin complex
GO:0031444 IGI slow-twitch skeletal muscle fiber contraction
GO:0051015 IEA actin filament binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000007301 Myh3-201 protein_coding Mus_musculus 0 2521
ENSMUST00000018632 Myh4-001 protein_coding Mus_musculus 0 2920
ENSMUST00000018637 Myh1-003 protein_coding Mus_musculus 0 2898
ENSMUST00000018641 Myh2-001 protein_coding Mus_musculus 0 2911
ENSMUST00000019625 Myh8-001 protein_coding Mus_musculus 0 2900
ENSMUST00000075734 Myh1-201 protein_coding Mus_musculus 0 2898
ENSMUST00000081857 Myh6-201 protein_coding Mus_musculus 0 3864
ENSMUST00000081911 Myh13-201 protein_coding Mus_musculus 0 2396
ENSMUST00000092995 Myh7b-001 protein_coding Mus_musculus 0 351
ENSMUST00000102803 Myh7-001 protein_coding Mus_musculus 0 3934
ENSMUST00000108684 Myh13-001 protein_coding Mus_musculus 0 2396
ENSMUST00000108685 Myh8-003 protein_coding Mus_musculus 0 252
ENSMUST00000108686 Myh8-002 retained_intron Mus_musculus 0 1227
ENSMUST00000108689 Myh3-001 protein_coding Mus_musculus 0 2521
ENSMUST00000124516 Myh1-001 protein_coding Mus_musculus 0 2898
ENSMUST00000139052 Myh8-004 retained_intron Mus_musculus 0 444
ENSMUST00000145322 Myh6-001 protein_coding Mus_musculus 0 2218
ENSMUST00000165221 Myh3-202 protein_coding Mus_musculus 0 2521
ENSMUST00000168485 Myh7-201 protein_coding Mus_musculus 0 3934
ENSMUST00000170159 Myh2-201 protein_coding Mus_musculus 0 2911
ENSMUST00000170942 Myh4-201 protein_coding Mus_musculus 0 2920
ENSMUST00000180845 Myh13-002 protein_coding Mus_musculus 0 2396
ENSMUST00000181027 Myh13-004 protein_coding Mus_musculus 0 281
ENST00000226207 MYH1-001 protein_coding Homo_sapiens 0 2811
ENST00000245503 MYH2-001 protein_coding Homo_sapiens 0 2654
ENST00000252172 MYH13-001 protein_coding Homo_sapiens 0 2311
ENST00000255381 MYH4-001 protein_coding Homo_sapiens 0 2959
ENST00000355349 MYH7-001 protein_coding Homo_sapiens 0 3940
ENST00000356287 MYH6-001 protein_coding Homo_sapiens 0 3897
ENST00000397183 MYH2-201 protein_coding Homo_sapiens 0 2654
ENST00000403437 MYH8-001 protein_coding Homo_sapiens 0 2540
ENST00000405093 MYH6-201 protein_coding Homo_sapiens 0 3897
ENST00000413734 MYH16-003 processed_transcript Homo_sapiens 0 309
ENST00000418404 MYH13-003 protein_coding Homo_sapiens 0 2311
ENST00000420805 MYH2-002 protein_coding Homo_sapiens 0 281
ENST00000439784 MYH16-001 unitary_pseudogene Homo_sapiens 0 656
ENST00000453194 MYH16-002 processed_transcript Homo_sapiens 0 195
ENST00000532183 MYH2-006 protein_coding Homo_sapiens 0 887
ENST00000557461 MYH6-002 retained_intron Homo_sapiens 0 1140
ENST00000578017 MYH2-009 protein_coding Homo_sapiens 0 326
ENST00000579489 MYH3-004 retained_intron Homo_sapiens 0 243
ENST00000583535 MYH3-001 protein_coding Homo_sapiens 0 2495
ENST00000621918 MYH13-201 protein_coding Homo_sapiens 0 2311
ENST00000622564 MYH2-202 protein_coding Homo_sapiens 0 887

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