C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: paired box 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000147923 Pax6-005 ENSMUSG00000027168 10090 + 2:105673963-105675876 processed_transcript

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00096J CIL_00096J_0002 VISTA 2:105147292-105748402
CIL_0007PY CIL_0007PY_0002 VISTA 2:105215855-105816711
CIL_0007JA CIL_0007JA_0005 UCNEbase 2:105301487-106575818
CIL_000914 CIL_000914_0002 VISTA 2:105311041-105914025
CIL_00017T CIL_00017T_0002 CGP 2:105386291-105697364
CIL_0007XG CIL_0007XG_0002 VISTA 2:105389599-105991449
CIL_0008UP CIL_0008UP_0002 VISTA 2:105418757-106020536
CIL_0007UQ CIL_0007UQ_0002 VISTA 2:105478530-106080039
CIL_0008KI CIL_0008KI_0002 VISTA 2:105533387-106134697
CIL_00096G CIL_00096G_0002 VISTA 2:105613336-106214486
CIL_0000ZD CIL_0000ZD_0002 CGP 2:105668900-105904564

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000241001 PAX6-002 protein_coding Homo_sapiens 5.00264e-43 180
ENST00000379111 PAX6-005 protein_coding Homo_sapiens 1.99965e-42 178
ENST00000379115 PAX6-001 protein_coding Homo_sapiens 5.00264e-43 180
ENST00000379123 PAX6-003 protein_coding Homo_sapiens 1.99965e-42 178
ENST00000419022 PAX6-201 protein_coding Homo_sapiens 6.99949e-42 178
ENST00000423822 PAX6-012 protein_coding Homo_sapiens 5.99756e-43 178
ENST00000438681 PAX6-013 protein_coding Homo_sapiens 3.9937e-43 178
ENST00000524853 PAX6-021 protein_coding Homo_sapiens 0 316
ENST00000525535 PAX6-020 protein_coding Homo_sapiens 7.00649e-43 178
ENST00000527769 PAX6-022 retained_intron Homo_sapiens 5.00264e-43 178
ENST00000532175 PAX6-023 retained_intron Homo_sapiens 5.00264e-43 178
ENST00000533333 PAX6-019 retained_intron Homo_sapiens 1.99965e-42 180
ENST00000606377 PAX6-202 protein_coding Homo_sapiens 0 327

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