C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: paired box 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000533333 PAX6-019 ENSG00000007372 9606 - 11:31789936-31811308 retained_intron

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008KI CIL_0008KI_0001 VISTA 11:31301275-31902571
CIL_0007UQ CIL_0007UQ_0001 VISTA 11:31363809-31965336
CIL_0008UP CIL_0008UP_0001 VISTA 11:31463875-32065678
CIL_0007XG CIL_0007XG_0001 VISTA 11:31494904-32096873
CIL_000914 CIL_000914_0001 VISTA 11:31574048-32177516
CIL_0007JA CIL_0007JA_0002 UCNEbase 11:31639896-31819124
CIL_0007PY CIL_0007PY_0001 VISTA 11:31667627-32268476
CIL_00096J CIL_00096J_0001 VISTA 11:31730852-32331950

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000111082 Pax6-012 protein_coding Mus_musculus 0 1701
ENSMUST00000111083 Pax6-009 protein_coding Mus_musculus 0 1701
ENSMUST00000090397 Pax6-011 protein_coding Mus_musculus 0 1701
ENSMUST00000111087 Pax6-002 protein_coding Mus_musculus 0 1701
ENSMUST00000167211 Pax6-201 protein_coding Mus_musculus 0 1692
ENSMUST00000090391 Pax6-013 protein_coding Mus_musculus 0 1692
ENSMUST00000111085 Pax6-008 protein_coding Mus_musculus 0 1692
ENSMUST00000111086 Pax6-001 protein_coding Mus_musculus 0 1692
ENSMUST00000146803 Pax6-026 processed_transcript Mus_musculus 0 1365
ENSMUST00000154643 Pax6-014 retained_intron Mus_musculus 0 1365
ENSMUST00000123063 Pax6-003 processed_transcript Mus_musculus 0 1090
ENSMUST00000135412 Pax6-020 processed_transcript Mus_musculus 0 981
ENSMUST00000140173 Pax6-019 processed_transcript Mus_musculus 0 913
ENSMUST00000153011 Pax6-018 processed_transcript Mus_musculus 0 898
ENSDART00000066224 pax6a-201 protein_coding Danio_rerio 0 870
ENSDART00000124577 pax6a-202 protein_coding Danio_rerio 0 870
ENSDART00000066225 pax6a-002 protein_coding Danio_rerio 0 870
ENSDART00000128877 pax6a-203 protein_coding Danio_rerio 0 861
ENSDART00000129319 pax6a-204 protein_coding Danio_rerio 0 861
ENSDART00000131523 pax6a-005 protein_coding Danio_rerio 0 861
ENSDART00000148420 pax6a-001 protein_coding Danio_rerio 0 861
ENSDART00000145946 pax6b-001 protein_coding Danio_rerio 0 826
ENSMUST00000154302 Pax6-024 retained_intron Mus_musculus 0 824
ENSMUST00000155081 Pax6-023 processed_transcript Mus_musculus 0 817
ENSMUST00000123000 Pax6-025 retained_intron Mus_musculus 0 787
ENSMUST00000111088 Pax6-004 protein_coding Mus_musculus 0 758
ENSMUST00000145744 Pax6-022 processed_transcript Mus_musculus 0 604
ENSMUST00000138365 Pax6-021 processed_transcript Mus_musculus 0 523
ENSDART00000139544 pax6a-008 protein_coding Danio_rerio 0 512
ENSDART00000133390 pax6a-009 protein_coding Danio_rerio 0 501
ENSDART00000014572 pax6b-201 protein_coding Danio_rerio 0 468
ENSDART00000132425 pax6a-006 protein_coding Danio_rerio 0 422
ENSMUST00000156216 Pax6-017 protein_coding Mus_musculus 0 361
ENSMUST00000147946 Pax6-027 retained_intron Mus_musculus 0 348
ENSDART00000137235 pax6b-006 processed_transcript Danio_rerio 0 198
ENSDART00000138689 pax6b-007 processed_transcript Danio_rerio 0 198
ENSMUST00000172990 Pax6-010 processed_transcript Mus_musculus 1.99965e-42 180
ENSMUST00000147923 Pax6-005 processed_transcript Mus_musculus 1.99965e-42 180
ENSMUST00000142772 Pax6-015 protein_coding Mus_musculus 1.99965e-42 180
ENSMUST00000153639 Pax6-016 retained_intron Mus_musculus 8.00001e-41 174

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