C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: 5',3'-nucleotidase, mitochondrial
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000149076 Nt5m-002 ENSMUSG00000032615 10090 + 11:59839447-59876533 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000149076
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000149076 9.538±2.24 15.069±5.95 13.669±6.78 7.092±0.24 7.070±1.42 5.001±0.36 4.874±0.77 3.791±2.02 4.271±0.00 9.345±2.25 11.718±0.00 37.130±13.22

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009A0 CIL_0009A0_0002 VISTA 11:59693037-60296757
CIL_00040N CIL_00040N_0002 CGP 11:59791408-59839838
CIL_0000NX CIL_0000NX_0002 CGP 11:59817795-59880968
CIL_0000NW CIL_0000NW_0002 CGP 11:59839447-59962205

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000268717 COPS3-001 protein_coding Homo_sapiens 3e-25 121
ENST00000389022 NT5M-007 protein_coding Homo_sapiens 0 562
ENST00000417352 COPS3-008 protein_coding Homo_sapiens 2e-25 121
ENST00000462236 COPS3-003 retained_intron Homo_sapiens 0.000003 57
ENST00000470418 NT5M-004 nonsense_mediated_decay Homo_sapiens 0 394
ENST00000477299 COPS3-006 nonsense_mediated_decay Homo_sapiens 1e-25 121
ENST00000478373 NT5M-002 nonsense_mediated_decay Homo_sapiens 0 340
ENST00000483704 NT5M-003 nonsense_mediated_decay Homo_sapiens 0 497
ENST00000492672 COPS3-007 nonsense_mediated_decay Homo_sapiens 5e-25 119
ENST00000577210 COPS3-019 nonsense_mediated_decay Homo_sapiens 2e-19 100
ENST00000577246 COPS3-015 nonsense_mediated_decay Homo_sapiens 3e-26 122
ENST00000578317 COPS3-013 nonsense_mediated_decay Homo_sapiens 3e-20 104
ENST00000582909 NT5M-006 processed_transcript Homo_sapiens 0 278
ENST00000584216 COPS3-016 nonsense_mediated_decay Homo_sapiens 2e-25 121
ENST00000616989 NT5M-201 protein_coding Homo_sapiens 0 496

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