C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000149145 Sema4a-014 ENSMUSG00000028064 10090 - 3:88435962-88450038 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartLungMuscleOvaryPlacentaTestisENSMUST00000149145
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Lung Muscle Ovary Placenta Testis
ENSMUST00000149145 2.772±0.00 2.309±0.18 4.840±0.00 6.371±3.75 7.484±1.26 20.363±1.27 0.602±0.12 4.337±1.41 0.303±0.06 2.907±0.94 0.365±0.09 1.608±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008JO CIL_0008JO_0002 VISTA 3:87838105-88441065
CIL_0008P5 CIL_0008P5_0002 VISTA 3:88218217-88823366
CIL_000898 CIL_000898_0002 VISTA 3:88224783-88827970

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000355014 SEMA4A-002 protein_coding Homo_sapiens 0 1389
ENST00000368282 SEMA4A-003 protein_coding Homo_sapiens 0 1389
ENST00000368284 SEMA4A-004 protein_coding Homo_sapiens 0 1389
ENST00000368285 SEMA4A-001 protein_coding Homo_sapiens 0 1389
ENST00000368286 SEMA4A-201 protein_coding Homo_sapiens 0 1389
ENST00000414683 SEMA4A-007 protein_coding Homo_sapiens 0 193
ENST00000435124 SEMA4A-015 protein_coding Homo_sapiens 0 198
ENST00000462892 SEMA4A-011 retained_intron Homo_sapiens 0 913
ENST00000466698 SEMA4A-009 retained_intron Homo_sapiens 0 231
ENST00000469065 SEMA4A-010 retained_intron Homo_sapiens 0 370
ENST00000487358 SEMA4A-006 processed_transcript Homo_sapiens 0 846

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