C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: autophagy related 4B, cysteine peptidase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000149436 Atg4b-003 ENSMUSG00000026280 10090 + 1:93751500-93775683 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; PlacentaTestisENSMUST00000149436
Transcript ID Placenta Testis
ENSMUST00000149436 36.281±12.09 12.325±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004U9 CIL_0004U9_0003 CGP 1:93685660-93754864
CIL_0003ST CIL_0003ST_0002 CGP 1:93701935-93790610
CIL_0004UA CIL_0004UA_0003 CGP 1:93751500-93801934

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0006508 IEA proteolysis
GO:0006914 IEA autophagy
GO:0008234 ISO cysteine-type peptidase activity
GO:0015031 IEA protein transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000344376 ATG4B-005 nonsense_mediated_decay Homo_sapiens 0 327
ENST00000400772 ATG4B-011 nonsense_mediated_decay Homo_sapiens 0 327
ENST00000402096 ATG4B-006 protein_coding Homo_sapiens 0 566
ENST00000404914 ATG4B-002 protein_coding Homo_sapiens 0 566
ENST00000405546 ATG4B-001 protein_coding Homo_sapiens 0 566
ENST00000419606 ATG4B-015 protein_coding Homo_sapiens 0 529
ENST00000425239 ATG4B-023 protein_coding Homo_sapiens 0 566
ENST00000429899 ATG4B-026 protein_coding Homo_sapiens 0 327
ENST00000430617 ATG4B-020 protein_coding Homo_sapiens 0 327
ENST00000465399 ATG4B-016 retained_intron Homo_sapiens 0 566
ENST00000468018 ATG4B-021 retained_intron Homo_sapiens 0 429
ENST00000482507 ATG4B-004 retained_intron Homo_sapiens 0 327
ENST00000493618 ATG4B-024 retained_intron Homo_sapiens 0 327
ENST00000494465 ATG4B-003 retained_intron Homo_sapiens 0 327

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