C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: kalirin, RhoGEF kinase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000151491 Kalrn-002 ENSMUSG00000061751 10090 - 16:34153467-34513944 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008HE CIL_0008HE_0002 VISTA 16:33792411-34395018

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005089 IEA Rho guanyl-nucleotide exchange factor activity
GO:0032321 IEA positive regulation of Rho GTPase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000000382 triob-201 protein_coding Danio_rerio 0 206
ENSDART00000153785 triob-001 protein_coding Danio_rerio 0 206
ENST00000240874 KALRN-005 protein_coding Homo_sapiens 0 3631
ENST00000344204 TRIO-001 protein_coding Homo_sapiens 0 1144
ENST00000354186 KALRN-004 protein_coding Homo_sapiens 0 3395
ENST00000360013 KALRN-201 protein_coding Homo_sapiens 0 3565
ENST00000393501 KALRN-008 retained_intron Homo_sapiens 0 2782
ENST00000448253 KALRN-010 protein_coding Homo_sapiens 0 950
ENST00000460856 KALRN-013 protein_coding Homo_sapiens 0 3461
ENST00000473056 KALRN-018 retained_intron Homo_sapiens 0 501
ENST00000484224 KALRN-020 retained_intron Homo_sapiens 0 436
ENST00000494648 KALRN-019 retained_intron Homo_sapiens 0 595
ENST00000498499 KALRN-021 retained_intron Homo_sapiens 0 1031
ENST00000509967 TRIO-008 protein_coding Homo_sapiens 0 1029
ENST00000512070 TRIO-010 nonsense_mediated_decay Homo_sapiens 0 1144
ENST00000513206 TRIO-002 protein_coding Homo_sapiens 0 1144
ENST00000515144 TRIO-003 retained_intron Homo_sapiens 0 1144
ENST00000522553 KALRN-011 retained_intron Homo_sapiens 1e-26 124

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