C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: myelin expression factor 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000558289 MYEF2-005 ENSG00000104177 9606 - 15:48139432-48149986 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000558289
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000558289 0.519±0.00 0.390±0.00 0.295±0.00 0.931±0.06 0.415±0.00 0.937±0.88 0.358±0.34 0.784±0.00 0.308±0.02 0.108±0.00 1.328±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004NB CIL_0004NB_0001 CGP 15:47184101-48142672
CIL_0004QO CIL_0004QO_0002 CGP 15:48120972-48178517
CIL_0004NI CIL_0004NI_0001 CGP 15:48134631-48203756

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000067780 Myef2-201 protein_coding Mus_musculus 0 662
ENSMUST00000147105 Myef2-003 protein_coding Mus_musculus 0 662
ENSMUST00000142718 Myef2-005 protein_coding Mus_musculus 0 662
ENSMUST00000129945 Myef2-007 processed_transcript Mus_musculus 0 643
ENSMUST00000089825 Myef2-002 protein_coding Mus_musculus 0 534
ENSMUST00000152367 Myef2-001 protein_coding Mus_musculus 0 507
ENSMUST00000110501 Myef2-008 nonsense_mediated_decay Mus_musculus 0 507
ENSMUST00000070353 Slc24a5-001 protein_coding Mus_musculus 0 425
ENSMUST00000061419 Gm9833-201 protein_coding Mus_musculus 0 313
ENSMUST00000137091 Myef2-004 protein_coding Mus_musculus 0 311
ENSMUST00000173269 Neu1-002 retained_intron Mus_musculus 0.0000005 62
ENSMUST00000034431 Tmem170-201 protein_coding Mus_musculus 0.000006 58

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