C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
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| Description: | collagen, type I, alpha 2 | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENSMUST00000155687  |
Col1a2-006 |
ENSMUSG00000029661 |
10090 | + |
6:4530156-4535057  |
retained_intron |
Expression PatternsNo expression data. |
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_0006DY | CIL_0006DY_0002 | CGP | 6:4076899-4541543 |
| CIL_00082O | CIL_00082O_0002 | VISTA | 6:4156170-4759324 |
| CIL_0007XR | CIL_0007XR_0002 | VISTA | 6:4183463-4785322 |
| CIL_00095G | CIL_00095G_0002 | VISTA | 6:4188993-4790635 |
| CIL_0008ZR | CIL_0008ZR_0002 | VISTA | 6:4253537-4855066 |
| CIL_0004SO | CIL_0004SO_0003 | CGP | 6:4504814-4643381 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| No GO terms available. | ||
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENST00000297268
|
COL1A2-001 | protein_coding | Homo_sapiens | 0 | 813 |
|
ENST00000461525
|
COL1A2-005 | retained_intron | Homo_sapiens | 0 | 414 |
|
ENST00000467931
|
COL1A2-006 | retained_intron | Homo_sapiens | 0 | 348 |
|
ENST00000469732
|
COL1A2-008 | retained_intron | Homo_sapiens | 2e-33 | 147 |
|
ENST00000473573
|
COL1A2-007 | retained_intron | Homo_sapiens | 0 | 496 |
|
ENST00000481570
|
COL1A2-002 | retained_intron | Homo_sapiens | 0 | 505 |
|
ENST00000497316
|
COL1A2-004 | retained_intron | Homo_sapiens | 0 | 671 |
|
ENST00000620463
|
COL1A2-201 | protein_coding | Homo_sapiens | 0 | 813 |
