C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: calcium channel, voltage-dependent, L type, alpha 1S subunit
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000160641 Cacna1s-002 ENSMUSG00000026407 10090 + 1:136052750-136119530 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastKidneyLungMuscleOvaryENSMUST00000160641
Transcript ID Brain Breast Kidney Lung Muscle Ovary
ENSMUST00000160641 0.023±0.01 24.997±6.52 1.142±0.05 1.477±0.09 145.360±11.08 0.165±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001501 IMP skeletal system development
GO:0002074 IMP extraocular skeletal muscle development
GO:0005245 IDA voltage-gated calcium channel activity
GO:0005891 IEA voltage-gated calcium channel complex
GO:0006816 IMP calcium ion transport
GO:0006936 IMP muscle contraction
GO:0006941 IMP striated muscle contraction
GO:0007029 IMP endoplasmic reticulum organization
GO:0007519 IMP skeletal muscle tissue development
GO:0007520 IMP myoblast fusion
GO:0007528 IMP neuromuscular junction development
GO:0008331 IBA high voltage-gated calcium channel activity
GO:0016529 IDA sarcoplasmic reticulum
GO:0030315 IDA T-tubule
GO:0034765 IEA regulation of ion transmembrane transport
GO:0043501 IMP skeletal muscle adaptation
GO:0048741 IMP skeletal muscle fiber development
GO:0055001 IMP muscle cell development
GO:0070509 IBA calcium ion import
GO:0070588 IEA calcium ion transmembrane transport
GO:0086010 IBA membrane depolarization during action potential

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000105895 cacna1sa-001 protein_coding Danio_rerio 0 1256
ENSDART00000062406 cacna1sb-001 protein_coding Danio_rerio 0 1194
ENSDART00000089956 cacna1da-201 protein_coding Danio_rerio 0 660
ENSDART00000100118 cacna1da-202 protein_coding Danio_rerio 0 660
ENSDART00000058276 cacna1da-001 protein_coding Danio_rerio 0 660
ENSDART00000028856 cacna1c-201 protein_coding Danio_rerio 0 466
ENSDART00000132909 cacna1c-001 protein_coding Danio_rerio 0 466
ENSDART00000011078 CACNA1F (1 of 2)-201 protein_coding Danio_rerio 0 243
ENST00000288139 CACNA1D-001 protein_coding Homo_sapiens 0 597
ENST00000327702 CACNA1C-023 protein_coding Homo_sapiens 0 713
ENST00000335762 CACNA1C-015 protein_coding Homo_sapiens 0 708
ENST00000344100 CACNA1C-021 protein_coding Homo_sapiens 0 708
ENST00000347598 CACNA1C-017 protein_coding Homo_sapiens 0 689
ENST00000350061 CACNA1D-003 protein_coding Homo_sapiens 0 597
ENST00000362061 CACNA1S-001 protein_coding Homo_sapiens 0 6772
ENST00000367338 CACNA1S-002 protein_coding Homo_sapiens 0 4604
ENST00000399591 CACNA1C-008 protein_coding Homo_sapiens 0 713
ENST00000399595 CACNA1C-002 protein_coding Homo_sapiens 0 708
ENST00000399597 CACNA1C-005 protein_coding Homo_sapiens 0 776
ENST00000399601 CACNA1C-020 protein_coding Homo_sapiens 0 713
ENST00000399603 CACNA1C-011 protein_coding Homo_sapiens 0 776
ENST00000399606 CACNA1C-019 protein_coding Homo_sapiens 0 621
ENST00000399617 CACNA1C-013 protein_coding Homo_sapiens 0 776
ENST00000399621 CACNA1C-006 protein_coding Homo_sapiens 0 708
ENST00000399629 CACNA1C-022 protein_coding Homo_sapiens 0 782
ENST00000399634 CACNA1C-012 protein_coding Homo_sapiens 0 708
ENST00000399637 CACNA1C-007 protein_coding Homo_sapiens 0 713
ENST00000399638 CACNA1C-004 protein_coding Homo_sapiens 0 776
ENST00000399641 CACNA1C-010 protein_coding Homo_sapiens 0 713
ENST00000399644 CACNA1C-003 protein_coding Homo_sapiens 0 782
ENST00000399649 CACNA1C-024 protein_coding Homo_sapiens 0 708
ENST00000399655 CACNA1C-001 protein_coding Homo_sapiens 0 708
ENST00000402845 CACNA1C-032 protein_coding Homo_sapiens 0 776
ENST00000406454 CACNA1C-031 protein_coding Homo_sapiens 0 776
ENST00000422281 CACNA1D-002 protein_coding Homo_sapiens 0 597
ENST00000480911 CACNA1C-018 protein_coding Homo_sapiens 0 710
ENST00000481478 CACNA1D-004 protein_coding Homo_sapiens 0 564
ENST00000613940 CACNA1C-201 protein_coding Homo_sapiens 0 776
ENST00000615303 CACNA1C-202 protein_coding Homo_sapiens 0 689
ENST00000615400 CACNA1C-203 protein_coding Homo_sapiens 0 689
ENST00000620878 CACNA1C-204 protein_coding Homo_sapiens 0 708
ENST00000621625 CACNA1C-205 protein_coding Homo_sapiens 0 713

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