C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: calcium channel, voltage-dependent, L type, alpha 1C subunit
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000028856 cacna1c-201 ENSDARG00000008398 7955 + 4:19253817-19410647 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainKidneyENSDART00000028856
Transcript ID Brain Kidney
ENSDART00000028856 1.011±0.23 0.161±0.09

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003XH CIL_0003XH_0001 CGP 4:19238522-19410662

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003007 IMP heart morphogenesis
GO:0005216 IEA ion channel activity
GO:0005244 IEA voltage-gated ion channel activity
GO:0005245 IEA voltage-gated calcium channel activity
GO:0005262 IEA calcium channel activity
GO:0005891 IEA voltage-gated calcium channel complex
GO:0006810 IEA transport
GO:0006811 IEA ion transport
GO:0006816 IMP calcium ion transport
GO:0008016 IMP regulation of heart contraction
GO:0016020 IEA membrane
GO:0016021 IEA integral to membrane
GO:0034765 IMP regulation of ion transmembrane transport
GO:0048701 IMP embryonic cranial skeleton morphogenesis
GO:0055085 IEA transmembrane transport
GO:0070509 IMP calcium ion import
GO:0070588 IEA calcium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000075591 Cacna1c-024 protein_coding Mus_musculus 0 2183
ENSMUST00000078320 Cacna1c-004 protein_coding Mus_musculus 0 2183
ENSMUST00000112064 Cacna1s-201 protein_coding Mus_musculus 0 466
ENSMUST00000112068 Cacna1s-001 protein_coding Mus_musculus 0 466
ENSMUST00000112790 Cacna1c-005 protein_coding Mus_musculus 0 2266
ENSMUST00000112793 Cacna1c-010 protein_coding Mus_musculus 0 1522
ENSMUST00000112825 Cacna1c-201 protein_coding Mus_musculus 0 752
ENSMUST00000160641 Cacna1s-002 protein_coding Mus_musculus 0 466
ENSMUST00000161700 Cacna1s-004 retained_intron Mus_musculus 0 344
ENSMUST00000161865 Cacna1s-003 protein_coding Mus_musculus 0 466
ENSMUST00000185345 Cacna1c-019 protein_coding Mus_musculus 0 1386
ENSMUST00000186889 Cacna1c-001 protein_coding Mus_musculus 0 2183
ENSMUST00000187317 Cacna1c-018 protein_coding Mus_musculus 0 1386
ENSMUST00000187386 Cacna1c-006 protein_coding Mus_musculus 0 1483
ENSMUST00000187474 Cacna1c-008 protein_coding Mus_musculus 0 2145
ENSMUST00000187940 Cacna1c-002 protein_coding Mus_musculus 0 2228
ENSMUST00000188078 Cacna1c-015 protein_coding Mus_musculus 0 2067
ENSMUST00000188106 Cacna1c-011 protein_coding Mus_musculus 0 1400
ENSMUST00000188181 Cacna1c-012 processed_transcript Mus_musculus 0 752
ENSMUST00000188522 Cacna1c-014 protein_coding Mus_musculus 0 1483
ENSMUST00000188865 Cacna1c-020 protein_coding Mus_musculus 0 2150
ENSMUST00000189389 Cacna1c-016 protein_coding Mus_musculus 0 2028
ENSMUST00000189520 Cacna1c-017 protein_coding Mus_musculus 0 2067
ENSMUST00000190285 Cacna1c-007 protein_coding Mus_musculus 0 1400
ENST00000288139 CACNA1D-001 protein_coding Homo_sapiens 0 483
ENST00000323022 CACNA1F-001 protein_coding Homo_sapiens 0 529
ENST00000327702 CACNA1C-023 protein_coding Homo_sapiens 0 2296
ENST00000335762 CACNA1C-015 protein_coding Homo_sapiens 0 1561
ENST00000344100 CACNA1C-021 protein_coding Homo_sapiens 0 2257
ENST00000347598 CACNA1C-017 protein_coding Homo_sapiens 0 1493
ENST00000350061 CACNA1D-003 protein_coding Homo_sapiens 0 894
ENST00000376251 CACNA1F-002 protein_coding Homo_sapiens 0 529
ENST00000376265 CACNA1F-007 protein_coding Homo_sapiens 0 529
ENST00000399591 CACNA1C-008 protein_coding Homo_sapiens 0 2281
ENST00000399595 CACNA1C-002 protein_coding Homo_sapiens 0 2242
ENST00000399597 CACNA1C-005 protein_coding Homo_sapiens 0 2169
ENST00000399601 CACNA1C-020 protein_coding Homo_sapiens 0 2296
ENST00000399603 CACNA1C-011 protein_coding Homo_sapiens 0 2290
ENST00000399606 CACNA1C-019 protein_coding Homo_sapiens 0 1493
ENST00000399617 CACNA1C-013 protein_coding Homo_sapiens 0 2290
ENST00000399621 CACNA1C-006 protein_coding Homo_sapiens 0 2257
ENST00000399629 CACNA1C-022 protein_coding Homo_sapiens 0 2207
ENST00000399634 CACNA1C-012 protein_coding Homo_sapiens 0 2379
ENST00000399637 CACNA1C-007 protein_coding Homo_sapiens 0 2296
ENST00000399638 CACNA1C-004 protein_coding Homo_sapiens 0 2169
ENST00000399641 CACNA1C-010 protein_coding Homo_sapiens 0 2418
ENST00000399644 CACNA1C-003 protein_coding Homo_sapiens 0 2207
ENST00000399649 CACNA1C-024 protein_coding Homo_sapiens 0 2237
ENST00000399655 CACNA1C-001 protein_coding Homo_sapiens 0 2257
ENST00000402845 CACNA1C-032 protein_coding Homo_sapiens 0 2169
ENST00000406454 CACNA1C-031 protein_coding Homo_sapiens 0 2290
ENST00000422281 CACNA1D-002 protein_coding Homo_sapiens 0 894
ENST00000465278 CACNA1C-016 protein_coding Homo_sapiens 0 305
ENST00000480911 CACNA1C-018 protein_coding Homo_sapiens 0 2206
ENST00000481085 CACNA1D-007 protein_coding Homo_sapiens 0 316
ENST00000481478 CACNA1D-004 protein_coding Homo_sapiens 0 366
ENST00000491104 CACNA1C-014 processed_transcript Homo_sapiens 0 298
ENST00000613940 CACNA1C-201 protein_coding Homo_sapiens 0 2015
ENST00000615303 CACNA1C-202 protein_coding Homo_sapiens 0 1218
ENST00000615400 CACNA1C-203 protein_coding Homo_sapiens 0 1218
ENST00000616390 CACNA1C-036 protein_coding Homo_sapiens 0 856
ENST00000620878 CACNA1C-204 protein_coding Homo_sapiens 0 2089
ENST00000621625 CACNA1C-205 protein_coding Homo_sapiens 0 2021

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