C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: glypican 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000292377 GPC2-001 ENSG00000213420 9606 - 7:100169606-100177367 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; OvaryTestisENST00000292377
Transcript ID Ovary Testis
ENST00000292377 0.374±0.13 6.185±3.50

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008QI CIL_0008QI_0001 VISTA 7:99696610-100298804
CIL_0005CG CIL_0005CG_0001 CGP 7:100159244-100177372
CIL_0005CH CIL_0005CH_0001 CGP 7:100169606-100221488

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001523 TAS retinoid metabolic process
GO:0005578 IEA proteinaceous extracellular matrix
GO:0005783 IDA endoplasmic reticulum
GO:0005796 TAS Golgi lumen
GO:0005886 TAS plasma membrane
GO:0005975 TAS carbohydrate metabolic process
GO:0006024 TAS glycosaminoglycan biosynthetic process
GO:0006027 TAS glycosaminoglycan catabolic process
GO:0007224 IEA smoothened signaling pathway
GO:0007603 TAS phototransduction, visible light
GO:0016020 IEA membrane
GO:0030182 IEA neuron differentiation
GO:0030203 TAS glycosaminoglycan metabolic process
GO:0030204 TAS chondroitin sulfate metabolic process
GO:0031225 IEA anchored component of membrane
GO:0043202 TAS lysosomal lumen
GO:0043395 IEA heparan sulfate proteoglycan binding
GO:0044281 TAS small molecule metabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000161827 Gpc2-001 protein_coding Mus_musculus 0 1666
ENSMUST00000161984 Gpc2-002 nonsense_mediated_decay Mus_musculus 0 1561
ENSMUST00000014089 Gpc2-004 protein_coding Mus_musculus 0 1543
ENSMUST00000159067 Gpc2-007 nonsense_mediated_decay Mus_musculus 0 854
ENSMUST00000162909 Gpc2-003 retained_intron Mus_musculus 0 601
ENSMUST00000159689 Gpc2-005 retained_intron Mus_musculus 0 523
ENSMUST00000159350 Gpc2-008 processed_transcript Mus_musculus 0 444
ENSMUST00000161055 Gpc2-006 retained_intron Mus_musculus 2e-29 135

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