C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: glypican 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000471717 GPC2-002 ENSG00000213420 9606 - 7:100173458-100177372 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonKidneyLungOvaryPlacentaENST00000471717
Transcript ID Adrenal Breast Colon Kidney Lung Ovary Placenta
ENST00000471717 0.858±0.00 0.372±0.00 0.836±0.00 0.188±0.00 0.087±0.00 0.066±0.00 0.016±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008QI CIL_0008QI_0001 VISTA 7:99696610-100298804
CIL_0005CG CIL_0005CG_0001 CGP 7:100159244-100177372
CIL_0005CH CIL_0005CH_0001 CGP 7:100169606-100221488

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000161827 Gpc2-001 protein_coding Mus_musculus 0 874
ENSMUST00000161984 Gpc2-002 nonsense_mediated_decay Mus_musculus 0 865
ENSMUST00000014089 Gpc2-004 protein_coding Mus_musculus 0 857
ENSMUST00000159067 Gpc2-007 nonsense_mediated_decay Mus_musculus 0 854
ENSMUST00000162909 Gpc2-003 retained_intron Mus_musculus 0 627
ENSMUST00000159350 Gpc2-008 processed_transcript Mus_musculus 0 440
ENSMUST00000159689 Gpc2-005 retained_intron Mus_musculus 0 440
ENSMUST00000161055 Gpc2-006 retained_intron Mus_musculus 2e-37 161

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