C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: glypican 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000471050 GPC2-003 ENSG00000213420 9606 - 7:100169629-100174724 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainColonHeartKidneyLungMuscleOvaryPlacentaTestisENST00000471050
Transcript ID Adipose Brain Colon Heart Kidney Lung Muscle Ovary Placenta Testis
ENST00000471050 0.220±0.00 0.904±0.00 0.132±0.00 0.062±0.00 0.196±0.00 0.244±0.00 0.056±0.00 0.656±0.00 0.110±0.08 0.722±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008QI CIL_0008QI_0001 VISTA 7:99696610-100298804
CIL_0005CG CIL_0005CG_0001 CGP 7:100159244-100177372
CIL_0005CH CIL_0005CH_0001 CGP 7:100169606-100221488

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000161827 Gpc2-001 protein_coding Mus_musculus 0 869
ENSMUST00000161984 Gpc2-002 nonsense_mediated_decay Mus_musculus 0 761
ENSMUST00000014089 Gpc2-004 protein_coding Mus_musculus 0 754
ENSMUST00000159067 Gpc2-007 nonsense_mediated_decay Mus_musculus 0 652
ENSMUST00000162909 Gpc2-003 retained_intron Mus_musculus 0 523
ENSMUST00000159689 Gpc2-005 retained_intron Mus_musculus 0 523
ENSMUST00000159350 Gpc2-008 processed_transcript Mus_musculus 3e-40 171
ENSMUST00000161055 Gpc2-006 retained_intron Mus_musculus 0.0000000003 71

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