C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: poly (A) polymerase alpha
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000164326 Papola-014 ENSMUSG00000021111 10090 + 12:105784745-105806589 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonLiverLungOvaryTestisENSMUST00000164326
Transcript ID Adrenal Breast Colon Liver Lung Ovary Testis
ENSMUST00000164326 38.153±12.87 25.714±4.82 36.781±12.40 20.412±1.82 37.525±0.00 49.813±13.74 46.551±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003HI CIL_0003HI_0002 CGP 12:105705982-105838944
CIL_0003HJ CIL_0003HJ_0002 CGP 12:105784694-106077410

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000398 IBA mRNA splicing, via spliceosome
GO:0004652 IDA polynucleotide adenylyltransferase activity
GO:0005634 IBA nucleus
GO:0005737 IBA cytoplasm
GO:0006369 IBA termination of RNA polymerase II transcription
GO:0006378 IBA mRNA polyadenylation
GO:0043631 IDA RNA polyadenylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000216277 PAPOLA-001 protein_coding Homo_sapiens 0 409
ENST00000392990 PAPOLA-005 protein_coding Homo_sapiens 0 313
ENST00000553357 PAPOLA-011 nonsense_mediated_decay Homo_sapiens 0 287
ENST00000553461 PAPOLA-025 protein_coding Homo_sapiens 5e-35 152
ENST00000553689 PAPOLA-003 nonsense_mediated_decay Homo_sapiens 0 409
ENST00000554130 PAPOLA-012 processed_transcript Homo_sapiens 0 409
ENST00000554887 PAPOLA-010 processed_transcript Homo_sapiens 0 241
ENST00000555224 PAPOLA-024 retained_intron Homo_sapiens 3e-25 119
ENST00000555626 PAPOLA-006 protein_coding Homo_sapiens 0 291
ENST00000555912 PAPOLA-007 retained_intron Homo_sapiens 1.99965e-42 178
ENST00000556619 PAPOLA-013 protein_coding Homo_sapiens 0 331
ENST00000557320 PAPOLA-002 protein_coding Homo_sapiens 0 409
ENST00000557406 PAPOLA-023 retained_intron Homo_sapiens 3e-25 119
ENST00000557471 PAPOLA-004 protein_coding Homo_sapiens 0 377

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