C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000166237 Sema4a-202 ENSMUSG00000028064 10090 - 3:88435962-88461182 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBreastHeartKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000166237
Transcript ID Adipose Bladder Breast Heart Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000166237 5.337±0.00 3.342±0.00 8.831±0.00 0.605±0.00 18.156±1.12 6.311±1.14 0.310±0.14 2.861±0.68 5.185±4.15 3.933±1.83

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008JO CIL_0008JO_0002 VISTA 3:87838105-88441065
CIL_0008P5 CIL_0008P5_0002 VISTA 3:88218217-88823366
CIL_000898 CIL_000898_0002 VISTA 3:88224783-88827970

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001525 IEA angiogenesis
GO:0002292 IMP T cell differentiation involved in immune response
GO:0004872 IEA receptor activity
GO:0005886 IEA plasma membrane
GO:0007409 IMP axonogenesis
GO:0008360 IDA regulation of cell shape
GO:0010594 IMP regulation of endothelial cell migration
GO:0016021 IEA integral component of membrane
GO:0016525 IMP negative regulation of angiogenesis
GO:0045063 IMP T-helper 1 cell differentiation
GO:0071526 IMP semaphorin-plexin signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000355014 SEMA4A-002 protein_coding Homo_sapiens 0 2193
ENST00000368282 SEMA4A-003 protein_coding Homo_sapiens 0 2193
ENST00000368284 SEMA4A-004 protein_coding Homo_sapiens 0 1768
ENST00000368285 SEMA4A-001 protein_coding Homo_sapiens 0 2193
ENST00000368286 SEMA4A-201 protein_coding Homo_sapiens 0 2145
ENST00000414683 SEMA4A-007 protein_coding Homo_sapiens 0 926
ENST00000435124 SEMA4A-015 protein_coding Homo_sapiens 0 1011
ENST00000438830 SEMA4A-013 protein_coding Homo_sapiens 0 381
ENST00000462892 SEMA4A-011 retained_intron Homo_sapiens 0 905
ENST00000466698 SEMA4A-009 retained_intron Homo_sapiens 0 366
ENST00000469065 SEMA4A-010 retained_intron Homo_sapiens 0 449
ENST00000470306 SEMA4A-005 retained_intron Homo_sapiens 0 357
ENST00000487358 SEMA4A-006 processed_transcript Homo_sapiens 0 1225

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