C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L26
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000293842 RPL26-001 ENSG00000161970 9606 - 17:8377520-8383193 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000293842
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000293842 352.577±0.00 452.165±0.00 206.277±0.00 324.831±187.00 442.058±120.49 582.124±12.08 255.869±19.33 381.398±76.71 422.036±213.17 559.962±213.37 460.524±29.76 980.353±862.48 882.735±204.48 284.974±69.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003723 TAS RNA binding
GO:0003735 IEA:NAS structural constituent of ribosome
GO:0005829 TAS cytosol
GO:0006364 IMP rRNA processing
GO:0006412 IEA:NAS translation
GO:0006413 TAS translational initiation
GO:0006414 TAS translational elongation
GO:0006415 TAS translational termination
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0010467 TAS gene expression
GO:0015934 IEA large ribosomal subunit
GO:0016020 IDA membrane
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0019058 TAS viral life cycle
GO:0019083 TAS viral transcription
GO:0022625 IDA cytosolic large ribosomal subunit
GO:0042273 IMP ribosomal large subunit biogenesis
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000073471 Rpl26-001 protein_coding Mus_musculus 0 540
ENSMUST00000118533 Gm15772-001 processed_pseudogene Mus_musculus 0 525
ENSMUST00000167436 Rpl26-201 protein_coding Mus_musculus 0 525
ENSMUST00000118781 Gm11826-001 processed_pseudogene Mus_musculus 0 512
ENSMUST00000183196 Gm10136-001 processed_pseudogene Mus_musculus 0 508
ENSMUST00000101014 Rpl26-002 protein_coding Mus_musculus 0 494
ENSMUST00000085379 Rpl26-ps2-201 processed_pseudogene Mus_musculus 0 459
ENSMUST00000170279 Rpl26-ps4-201 processed_pseudogene Mus_musculus 0 453
ENSMUST00000122220 Rpl26-ps5-001 processed_pseudogene Mus_musculus 0 448
ENSMUST00000118045 Gm15896-001 processed_pseudogene Mus_musculus 0 424
ENSMUST00000128952 Rpl26-003 protein_coding Mus_musculus 0 374
ENSMUST00000122414 Gm11506-001 processed_pseudogene Mus_musculus 0 287

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