C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000424037 RP11-416L21.1-001 ENSG00000213495 9606 + 2:60711484-60711920 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonLiverLungMuscleENST00000424037
Transcript ID Adipose Adrenal Brain Breast Colon Liver Lung Muscle
ENST00000424037 0.034±0.00 0.071±0.00 0.037±0.00 0.036±0.00 0.067±0.00 0.031±0.00 0.132±0.00 0.062±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008GM CIL_0008GM_0001 VISTA 2:60234269-60835938
CIL_0009DA CIL_0009DA_0001 VISTA 2:60267677-60869129
CIL_0008PG CIL_0008PG_0001 VISTA 2:60327921-60929753

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000183196 Gm10136-001 processed_pseudogene Mus_musculus 0 390
ENSMUST00000167436 Rpl26-201 protein_coding Mus_musculus 0 385
ENSMUST00000073471 Rpl26-001 protein_coding Mus_musculus 0 385
ENSMUST00000118533 Gm15772-001 processed_pseudogene Mus_musculus 0 379
ENSMUST00000118781 Gm11826-001 processed_pseudogene Mus_musculus 0 374
ENSMUST00000101014 Rpl26-002 protein_coding Mus_musculus 0 363
ENSMUST00000118045 Gm15896-001 processed_pseudogene Mus_musculus 0 340
ENSMUST00000170279 Rpl26-ps4-201 processed_pseudogene Mus_musculus 0 340
ENSMUST00000122220 Rpl26-ps5-001 processed_pseudogene Mus_musculus 0 337
ENSMUST00000085379 Rpl26-ps2-201 processed_pseudogene Mus_musculus 0 335
ENSMUST00000128952 Rpl26-003 protein_coding Mus_musculus 0 276
ENSMUST00000122414 Gm11506-001 processed_pseudogene Mus_musculus 0 193
ENSMUST00000118758 Gm12871-001 processed_pseudogene Mus_musculus 0.000000000006 75

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